Dear Johannes,
The compilation comes to an end without error.
I run: source fenics.custom
then, I can clarify dolfin version 1.5.0
I copied the demo from
.hashdist/bld/dolfin/7zdpq5r4sgsm/share/dolfin/demo to /Documents.
There is an error when the poisson demo in
/demo/documented/poisson/python is tested
python demo_poisson.py
I attach error messages. Can you please show me again how to fix? Thanks!
Best regards,
Dang
==================================================
Calling FFC just-in-time (JIT) compiler, this may take some time.
Traceback (most recent call last):
File "demo_poisson.py", line 41, in <module>
V = FunctionSpace(mesh, "Lagrange", 1)
File
"/home/fenics/.hashdist/bld/profile/reh75l7mlrkg/lib/python2.7/site-packages/dolfin/functions/functionspace.py",
line 468, in __init__
FunctionSpaceBase.__init__(self, mesh, element, constrained_domain)
File
"/home/fenics/.hashdist/bld/profile/reh75l7mlrkg/lib/python2.7/site-packages/dolfin/functions/functionspace.py",
line 153, in __init__
ufc_element, ufc_dofmap = jit(self._ufl_element, mpi_comm=mesh.mpi_comm())
File
"/home/fenics/.hashdist/bld/profile/reh75l7mlrkg/lib/python2.7/site-packages/dolfin/compilemodules/jit.py",
line 64, in mpi_jit
return local_jit(*args, **kwargs)
File
"/home/fenics/.hashdist/bld/profile/reh75l7mlrkg/lib/python2.7/site-packages/dolfin/compilemodules/jit.py",
line 128, in jit
return form_compiler.jit(form, parameters=p)
File
"/home/fenics/.hashdist/bld/profile/reh75l7mlrkg/lib/python2.7/site-packages/ffc/jitcompiler.py",
line 72, in jit
return jit_element(ufl_object, parameters)
File
"/home/fenics/.hashdist/bld/profile/reh75l7mlrkg/lib/python2.7/site-packages/ffc/jitcompiler.py",
line 177, in jit_element
compiled_form, module, prefix = jit_form(form, parameters)
File
"/home/fenics/.hashdist/bld/profile/reh75l7mlrkg/lib/python2.7/site-packages/ffc/jitcompiler.py",
line 130, in jit_form
parameters=parameters)
File
"/home/fenics/.hashdist/bld/profile/reh75l7mlrkg/lib/python2.7/site-packages/ffc/compiler.py",
line 176, in compile_form
format_code(code, wrapper_code, prefix, parameters)
File
"/home/fenics/.hashdist/bld/profile/reh75l7mlrkg/lib/python2.7/site-packages/ffc/formatting.py",
line 114, in format_code
_write_file(code_h, prefix, ".h", parameters)
File
"/home/fenics/.hashdist/bld/profile/reh75l7mlrkg/lib/python2.7/site-packages/ffc/formatting.py",
line 137, in _write_file
hfile = open(filename, "w")
IOError: [Errno 13] Permission denied:
'./ffc_form_746ebe8521dc9d314e6f65075dbc60d03cfee94b.h'
==================================================
On 7/15/15, Johannes Ring <[email protected]> wrote:
> The problem is this:
>
> c++: internal compiler error: Killed (program cc1plus)
>
> This is usually caused by a bug in the compiler or that you ran out of
> memory. If it is the latter case, you can try to build with only one thread
> to save some memory:
>
> export PROCS=1
>
> Then run fenics-install.sh again.
>
> Johannes
>
> On Wed, Jul 15, 2015 at 3:45 PM nguyen dang <[email protected]> wrote:
>
>> Hello,
>> I could fix that error by installing libXt-devel
>> sudo yum install libXt-devel
>> There is a new error with mshr
>> [mshr] Building mshr/7olinw2dfk5t, follow log with:
>> [mshr] tail -f
>> /home/fenics/.hashdist/tmp/mshr-7olinw2dfk5t/_hashdist/build.log
>> [mshr|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']' returned
>> non-zero exit status 2
>> [mshr|ERROR] command failed (code=2); raising
>> real 3607.89
>> user 2537.20
>> sys 382.04
>> I attach log file.
>> Thanks again for your help.
>> Best regards,
>> Dang
>>
>>
>> On 7/15/15, Johannes Ring <[email protected]> wrote:
>> > Ok, this is a different error, so I assume that slepc has been built
>> > successfully. The problem with vtk is this:
>> >
>> > fatal error: X11/StringDefs.h: No such file or directory
>> >
>> > This file can be found in the libxt-dev package on Ubuntu, but I'm not
>> sure
>> > what system you are on. You can either install this file or build
>> > without
>> > vtk by removing it from local.yaml. In the latter case, you will not be
>> > able to do any plotting with DOLFIN.
>> >
>> > Johannes
>> >
>> >
>> > On Wed, Jul 15, 2015 at 11:23 AM nguyen dang <[email protected]>
>> > wrote:
>> >
>> >> Dear Johannes,
>> >> Thanks for your quick response. I followed your instructions but I
>> >> still get error:
>> >> [vtk] Building vtk/of7hll3bl2ul, follow log with:
>> >> [vtk] tail -f
>> >> /home/fenics/.hashdist/tmp/vtk-of7hll3bl2ul-3/_hashdist/build.log
>> >> [vtk|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']' returned
>> >> non-zero exit status 2
>> >> [vtk|ERROR] command failed (code=2); raising
>> >> real 1267.00
>> >> user 1092.49
>> >> sys 147.74
>> >> I attach build.log and local.yaml
>> >> Thanks for your help,
>> >> Best regards,
>> >> Dang
>> >>
>> >>
>> >>
>> >>
>> >> On 7/15/15, Johannes Ring <[email protected]> wrote:
>> >> > [Please include fenics-support in Cc]
>> >> >
>> >> > The problem is that it links with the system LAPACK and BLAS instead
>> of
>> >> > OpenBLAS that HashDist has built. The quick fix will be to build
>> >> > PETSc
>> >> > without MUMPS. Try this:
>> >> >
>> >> > git clone
>> >> https://bitbucket.org/fenics-project/fenics-developer-tools.git
>> >> > cd fenics-developer-tools
>> >> > cp install/profiles/fenics.Linux.yaml local.yaml
>> >> > editor local.yaml
>> >> >
>> >> > Now remove the following two lines from local.yaml:
>> >> >
>> >> > download: |
>> >> > mumps, scalapack, blacs, ml
>> >> >
>> >> > Finally, run:
>> >> >
>> >> > ./install/fenics-install.sh local.yaml
>> >> >
>> >> > Johannes
>> >> >
>> >> > On Tue, Jul 14, 2015 at 7:13 PM André Timótheo
>> >> > <[email protected]>
>> >> > wrote:
>> >> >
>> >> >>
>> >> >>
>> >> >> Em ter, 14 de jul de 2015 às 09:33, Johannes Ring
>> >> >> <[email protected]
>> >
>> >> >> escreveu:
>> >> >>
>> >> >>> The error in the build.log is this:
>> >> >>>
>> >> >>> 2015/07/13 23:09:48 - INFO: [package:run_job] ERROR: See
>> >> >>> "arch-linux2-c-opt/conf/configure.log" file for
>> >> >>> details
>> >> >>>
>> >> >>> 2015/07/13 23:09:48 - INFO: [package:run_job] Checking
>> >> >>> environment...
>> >> >>> 2015/07/13 23:09:48 - INFO: [package:run_job] Checking PETSc
>> >> >>> installation...
>> >> >>> 2015/07/13 23:09:48 - INFO: [package:run_job] ERROR: Unable to
>> >> >>> link
>> >> with
>> >> >>> PETSc
>> >> >>>
>> >> >>> Please send us
>> >> >>>
>> >>
>> /projects/d800605f-5bec-48c8-8c21-5fa60022fa9a/.hashdist/tmp/slepc-bvy3tmydxkf2-3/arch-linux2-c-opt/conf/configure.log
>> >> >>> as an attachment.
>> >> >>>
>> >> >>> Johannes
>> >> >>>
>> >> >>> On Tue, Jul 14, 2015 at 2:26 PM André Timótheo <
>> [email protected]>
>> >> >>> wrote:
>> >> >>>
>> >> >>>> I am trying to install FEniCS on SageMathCloud via curl -s
>> >> >>>> http://fenicsproject.org/fenics-install.sh | bash
>> >> >>>> ( the option [1] stable fenics version )
>> >> >>>>
>> >> >>>> I have some problems with slepc:
>> >> >>>> [slepc
>> >> >>>> ] tail -f
>> >> >>>>
>> >>
>> /projects/d800605f-5bec-48c8-8c21-5fa60022fa9a/.hashdist/tmp/slepc-bvy3tmydx
>> >> >>>> kf2-3/_hashdist/build.log
>> >> >>>> [slepc|ERROR
>> >> >>>> ] Command '[u'/bin/bash', '_hashdist/build.sh']' returned
>> >> >>>> non-zero
>> >> exit
>> >> >>>> status 1
>> >> >>>> [slepc|ERROR] command failed (code=1); raising
>> >> >>>>
>> >> >>>> The build.log error file is attached.
>> >> >>>>
>> >> >>>> Thank you very much for any kind of *help*.
>> >> >>>>
>> >> >>>> André Timótheo
>> >> >>>>
>> >> >>> _______________________________________________
>> >> >>>> fenics-support mailing list
>> >> >>>> [email protected]
>> >> >>>> http://fenicsproject.org/mailman/listinfo/fenics-support
>> >> >>>>
>> >> >>>
>> >> >
>> >>
>> >>
>> >> --
>> >> Nguyen Van Dang
>> >> Hand phone: +34 675 16 95 90
>> >> Alameda Mazarredo, 14, 48009 Bilbao, Bizkaia
>> >> Spain
>> >>
>> >
>>
>>
>> --
>> Nguyen Van Dang
>> Hand phone: +34 675 16 95 90
>> Alameda Mazarredo, 14, 48009 Bilbao, Bizkaia
>> Spain
>>
>
--
Nguyen Van Dang
Hand phone: +34 675 16 95 90
Alameda Mazarredo, 14, 48009 Bilbao, Bizkaia
Spain
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