Hello Johannes,
I do agree with you.
The Intel's environment is set by using Intel's scripts in my ".bashrc"
file.
.
/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/bin/compilervars_global.sh
intel64
.
/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/mpi/intel64/bin/mpivars.sh
I have changed the "config.yaml" file : "build_dirs" are not in my home
but elsewhere on a shared filesystem.
I have changed the local.yaml file by looking what I did some weeks ago :
parameters:
PROLOGUE: |
export
FC=/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/bin/intel64/ifort
; export
CC=/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/bin/intel64/icc
; export
CXX=/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/bin/intel64/icpc
Should I set "the LD_LIBRARY_PATH" and the "PATH" env. variables as
"FC", "CC", "CXX" juste above at the end of the "local.yaml" file ?
Regards,
Guy.
Le 17/11/2015 12:36, Johannes Ring a écrit :
It looks like you need to set LD_LIBRARY_PATH for your Intel compiler
to work. How do you load the Intel compilers? Have you made a custom
HashDist profile? If so, please attach it in your reply.
Johannes
On Tue, Nov 17, 2015 at 11:53 AM Guy Moebs <[email protected]
<mailto:[email protected]>> wrote:
Hello,
I need some help to finish installation of Fenics with Intel compilers
(icc --version : icc (ICC) 16.0.0 20150815)
I have to rebuild Fenics using the Intel's compilers. It stops during
the compilation of the "ncurses" package :
[ncurses] Building ncurses/owf7yx4rawfd, follow log with:
[ncurses] tail -f
/work/mdsip/fenics/1.6.0_intel/tmp/ncurses-owf7yx4rawfd/_hashdist/build.log
[ncurses|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']'
returned
non-zero exit status 2
[ncurses|ERROR] command failed (code=2); raising
If I look at its "build.log" file I see :
2015/11/17 11:01:21 - INFO: [package:run_job] /bin/sh ./run_tic.sh
2015/11/17 11:01:21 - INFO: [package:run_job] ** Building terminfo
database, please wait...
2015/11/17 11:01:21 - INFO: [package:run_job] Running sh ./shlib
tic to
install
/work/mdsip/fenics/1.6.0_intel/bld/ncurses/owf7yx4rawfd/share/terminfo
...
2015/11/17 11:01:21 - INFO: [package:run_job]
2015/11/17 11:01:21 - INFO: [package:run_job] You may see messages
regarding extended capabilities, e.g., AX.
2015/11/17 11:01:21 - INFO: [package:run_job] These are extended
terminal capabilities which are compiled
2015/11/17 11:01:21 - INFO: [package:run_job] using
2015/11/17 11:01:21 - INFO: [package:run_job] tic -x
2015/11/17 11:01:21 - INFO: [package:run_job] If you have
ncurses 4.2
applications, you should read the INSTALL
2015/11/17 11:01:21 - INFO: [package:run_job] document, and install
the terminfo without the -x option.
2015/11/17 11:01:21 - INFO: [package:run_job]
2015/11/17 11:01:21 - INFO: [package:run_job] tic: error while loading
shared libraries: libimf.so: cannot open shared object file: No such
file or directory
2015/11/17 11:01:21 - INFO: [package:run_job] ? tic could not build
/work/mdsip/fenics/1.6.0_intel/bld/ncurses/owf7yx4rawfd/share/terminfo
2015/11/17 11:01:21 - INFO: [package:run_job] make[1]: ***
[install.data] Error 1
2015/11/17 11:01:21 - INFO: [package:run_job] make[1]: Leaving
directory
`/work/mdsip/fenics/1.6.0_intel/tmp/ncurses-owf7yx4rawfd/misc'
2015/11/17 11:01:21 - INFO: [package:run_job] make: *** [install]
Error 2
2015/11/17 11:01:21 - ERROR: [package:run_job] Command '[u'/bin/bash',
'_hashdist/build.sh']' returned non-zero exit status 2
2015/11/17 11:01:21 - ERROR: [package:run_job] command failed
(code=2);
raising
I think that the error is that the script does not find the shared
library "libimf.so" which is, of course, present inside the Intel's
compilers files tree. So it might be a path problem.
As my shell's environment is enriched regarding Intel's compilers,
I go
to the "ncurses-owf7yx4rawfd/misc" directory and I run the script
"run_tic.sh" .
> cd /work/mdsip/fenics/1.6.0_intel/tmp/ncurses-owf7yx4rawfd/misc/
> /bin/sh ./run_tic.sh
** Building terminfo database, please wait...
Running sh ./shlib tic to install
/work/mdsip/fenics/1.6.0_intel/bld/ncurses/owf7yx4rawfd/share/terminfo
...
You may see messages regarding extended capabilities, e.g., AX.
These are extended terminal capabilities which are compiled
using
tic -x
If you have ncurses 4.2 applications, you should read the INSTALL
document, and install the terminfo without the -x option.
1650 entries written to
/work/mdsip/fenics/1.6.0_intel/bld/ncurses/owf7yx4rawfd/share/terminfo
** built new
/work/mdsip/fenics/1.6.0_intel/bld/ncurses/owf7yx4rawfd/share/terminfo
ln: failed to create symbolic link
«
/work/mdsip/fenics/1.6.0_intel/bld/ncurses/owf7yx4rawfd/lib/terminfo
»: No
such file or directory
** could not sym-link
/work/mdsip/fenics/1.6.0_intel/bld/ncurses/owf7yx4rawfd/lib/terminfo
for
compatibility
If I print the value of "RELATIVE" and "TICDIR", I get :
RELATIVE:../share/terminfo
TICDIR:/work/mdsip/fenics/1.6.0_intel/bld/ncurses/owf7yx4rawfd/lib/terminfo
So I make the directory "lib" as
"/work/mdsip/fenics/1.6.0_intel/bld/ncurses/owf7yx4rawfd/lib" and It
works fine.
But If I go back to the "fenics-install.sh" script step, It fails back
as the first time above with "libimf.so" error.
What should I modify to finish the "ncurse" installation ?
Thank you in advance for your help
Regards,
Guy
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