Thank you for your message.
It works fine for this problem and the compilation goes further.
Now I have a compilation error with the "zmq" package
=========================] 100.0% (2.0MB of 2.0MB) 1.405MB/s ETA 0s
[zmq] Building zmq/32k234mmpyhn, follow log with:
[zmq] tail -f
/work/mdsip/fenics/1.6.0_intel/tmp/zmq-32k234mmpyhn/_hashdist/build.log
[zmq|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']' returned
non-zero exit status 2
[zmq|ERROR] command failed (code=2); raising
The end of its "build.log" file is :
2015/11/17 14:58:37 - INFO: [package:run_job] make[2]: Entering
directory `/work/mdsip/fenics/1.6.0_intel/tmp/zmq-32k234mmpyhn/src'
2015/11/17 14:58:37 - INFO: [package:run_job] CXX libzmq_la-address.lo
2015/11/17 14:58:37 - INFO: [package:run_job] CXX libzmq_la-clock.lo
2015/11/17 14:58:37 - INFO: [package:run_job] CXX libzmq_la-ctx.lo
2015/11/17 14:58:37 - INFO: [package:run_job] CXX libzmq_la-decoder.lo
2015/11/17 14:58:38 - INFO: [package:run_job] CXX libzmq_la-devpoll.lo
2015/11/17 14:58:38 - INFO: [package:run_job] CXX libzmq_la-dist.lo
2015/11/17 14:58:39 - INFO: [package:run_job] CXX libzmq_la-encoder.lo
2015/11/17 14:58:39 - INFO: [package:run_job] CXX libzmq_la-epoll.lo
2015/11/17 14:58:39 - INFO: [package:run_job] CXX libzmq_la-err.lo
2015/11/17 14:58:40 - INFO: [package:run_job] CXX libzmq_la-fq.lo
2015/11/17 14:58:40 - INFO: [package:run_job] CXX libzmq_la-io_object.lo
2015/11/17 14:58:40 - INFO: [package:run_job] CXX libzmq_la-io_thread.lo
2015/11/17 14:58:40 - INFO: [package:run_job] CXX libzmq_la-ip.lo
2015/11/17 14:58:40 - INFO: [package:run_job] CXX libzmq_la-ipc_address.lo
2015/11/17 14:58:41 - INFO: [package:run_job] CXX
libzmq_la-ipc_connecter.lo
2015/11/17 14:58:41 - INFO: [package:run_job] CXX
libzmq_la-ipc_listener.lo
2015/11/17 14:58:41 - INFO: [package:run_job] CXX libzmq_la-kqueue.lo
2015/11/17 14:58:41 - INFO: [package:run_job] In file included from
ipc_connecter.cpp(28):
2015/11/17 14:58:41 - INFO: [package:run_job] stream_engine.hpp(97):
error #82: storage class is not first
2015/11/17 14:58:41 - INFO: [package:run_job] const static
size_t greeting_size = 12;
2015/11/17 14:58:41 - INFO: [package:run_job] ^
2015/11/17 14:58:41 - INFO: [package:run_job]
2015/11/17 14:58:41 - INFO: [package:run_job] compilation aborted for
ipc_connecter.cpp (code 2)
2015/11/17 14:58:41 - INFO: [package:run_job] make[2]: ***
[libzmq_la-ipc_connecter.lo] Error 1
2015/11/17 14:58:41 - INFO: [package:run_job] make[2]: *** Waiting for
unfinished jobs....
2015/11/17 14:58:41 - INFO: [package:run_job] In file included from
ipc_listener.cpp(29):
2015/11/17 14:58:41 - INFO: [package:run_job] stream_engine.hpp(97):
error #82: storage class is not first
2015/11/17 14:58:41 - INFO: [package:run_job] const static
size_t greeting_size = 12;
2015/11/17 14:58:41 - INFO: [package:run_job] ^
2015/11/17 14:58:41 - INFO: [package:run_job]
2015/11/17 14:58:41 - INFO: [package:run_job] compilation aborted for
ipc_listener.cpp (code 2)
2015/11/17 14:58:41 - INFO: [package:run_job] make[2]: ***
[libzmq_la-ipc_listener.lo] Error 1
2015/11/17 14:58:42 - INFO: [package:run_job] make[2]: Leaving directory
`/work/mdsip/fenics/1.6.0_intel/tmp/zmq-32k234mmpyhn/src'
2015/11/17 14:58:42 - INFO: [package:run_job] make[1]: *** [all] Error 2
2015/11/17 14:58:42 - INFO: [package:run_job] make[1]: Leaving directory
`/work/mdsip/fenics/1.6.0_intel/tmp/zmq-32k234mmpyhn/src'
2015/11/17 14:58:42 - INFO: [package:run_job] make: *** [all-recursive]
Error 1
2015/11/17 14:58:42 - ERROR: [package:run_job] Command '[u'/bin/bash',
'_hashdist/build.sh']' returned non-zero exit status 2
2015/11/17 14:58:42 - ERROR: [package:run_job] command failed (code=2);
raising
Regards,
Guy
Le 17/11/2015 13:59, Johannes Ring a écrit :
Sourcing compilervars_global.sh should set the correct paths
(LD_LIBRARY_PATH, etc.). I would try with the following in your
local.yaml:
parameters:
PROLOGUE: |
.
/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/bin/compilervars_global.sh
intel64; .
/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/mpi/intel64/bin/mpivars.sh;
echo "setting default compilers"; export CC=icc; export CXX=icpc;
export FC=ifort; export F77=ifort; export F90=ifort
Johannes
On Tue, Nov 17, 2015 at 1:42 PM Guy Moebs <[email protected]
<mailto:[email protected]>> wrote:
Hello Johannes,
I do agree with you.
The Intel's environment is set by using Intel's scripts in my
".bashrc" file.
.
/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/bin/compilervars_global.sh
intel64
.
/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/mpi/intel64/bin/mpivars.sh
I have changed the "config.yaml" file : "build_dirs" are not in my
home but elsewhere on a shared filesystem.
I have changed the local.yaml file by looking what I did some
weeks ago :
parameters:
PROLOGUE: |
export
FC=/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/bin/intel64/ifort
; export
CC=/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/bin/intel64/icc
; export
CXX=/ccipl/logiciels/intel/compilers_and_libraries_2016.0.109/linux/bin/intel64/icpc
Should I set "the LD_LIBRARY_PATH" and the "PATH" env. variables
as "FC", "CC", "CXX" juste above at the end of the "local.yaml" file ?
Regards,
Guy.
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