Does installing the following patch help [1]? sudo add-apt-repository ppa:bzindovic/suitesparse-bugfix-1319687 sudo apt-get update sudo apt-get upgrade
[1] https://groups.google.com/forum/#!topic/dealii/Kdz_PyA0gZE Jan On Sun, 29 Nov 2015 22:37:42 -0700 Chris Leibs <[email protected]> wrote: > Hi Fenics support, > > OS details: > > Distributor ID: Ubuntu > Description: Ubuntu 14.04.3 LTS > Release: 14.04 > Codename: trusty > > I recently upgraded from FEniCS 1.5 to FEniCS 1.6 via re-running: > > $ sudo add-apt-repository ppa:fenics-packages/fenics > $ sudo apt-get update > $ sudo apt-get install fenics > $ sudo apt-get dist-upgrade > > Everything upgraded as expected with no errors, warnings, etc. Now, > upon running any example, or previously working code. I run into the > error: > > ################################## > RuntimeError: In instant.recompile: The module did not compile with > command 'make VERBOSE=1', see > '/home/chris/.instant/error/dolfin_compile_code_c8b988ab6016262c9eebd6dc8482b98c0cf05c33/compile.log' > ################################## > > I believe the key lines in the log file are: > > ################################## > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/libsuitesparseconfig.a(SuiteSparse_config.o): > relocation R_X86_64_32S against `malloc' can not be used when making a > shared object; recompile with -fPIC > > /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/libsuitesparseconfig.a: > error adding symbols: Bad value > > collect2: error: ld returned 1 exit status > ################################## > > I have tried all permutations of purging via ppa-purge, apt-get > remove, apt-get purge, followed by the ppa installation instructions. > All routes lead back to the same error and same message in the instant > log file. > > As another data point: On a different computer, a clean install of > Ubuntu 14.04, followed by a clean install of Fenics 1.6 (via ppa) > yields a perfectly working copy. > > I have found a similar account of the problem here, > > http://fenicsproject.org/qa/7402/expression-does-not-work-anymore > > but have been unable to resolve it from the supplied information. > > Many thanks for any help you can provide. > > - Chris > _______________________________________________ > fenics-support mailing list > [email protected] > http://fenicsproject.org/mailman/listinfo/fenics-support _______________________________________________ fenics-support mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics-support
