Unfortunately, this fix does not seem to remedy the problem. The same error and log file are generated.
I have uploaded the complete log file here: http://grandmaster.colorado.edu/~chris/debug/compile.log Maybe you will be able to see a detail I missed that is causing the problem. -Chris On Mon, Nov 30, 2015 at 3:29 AM, Jan Blechta <[email protected]> wrote: > Does installing the following patch help [1]? > > sudo add-apt-repository ppa:bzindovic/suitesparse-bugfix-1319687 > sudo apt-get update > sudo apt-get upgrade > > [1] https://groups.google.com/forum/#!topic/dealii/Kdz_PyA0gZE > > Jan > > > On Sun, 29 Nov 2015 22:37:42 -0700 > Chris Leibs <[email protected]> wrote: > > > Hi Fenics support, > > > > OS details: > > > > Distributor ID: Ubuntu > > Description: Ubuntu 14.04.3 LTS > > Release: 14.04 > > Codename: trusty > > > > I recently upgraded from FEniCS 1.5 to FEniCS 1.6 via re-running: > > > > $ sudo add-apt-repository ppa:fenics-packages/fenics > > $ sudo apt-get update > > $ sudo apt-get install fenics > > $ sudo apt-get dist-upgrade > > > > Everything upgraded as expected with no errors, warnings, etc. Now, > > upon running any example, or previously working code. I run into the > > error: > > > > ################################## > > RuntimeError: In instant.recompile: The module did not compile with > > command 'make VERBOSE=1', see > > > '/home/chris/.instant/error/dolfin_compile_code_c8b988ab6016262c9eebd6dc8482b98c0cf05c33/compile.log' > > ################################## > > > > I believe the key lines in the log file are: > > > > ################################## > > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/libsuitesparseconfig.a(SuiteSparse_config.o): > > relocation R_X86_64_32S against `malloc' can not be used when making a > > shared object; recompile with -fPIC > > > > > /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/libsuitesparseconfig.a: > > error adding symbols: Bad value > > > > collect2: error: ld returned 1 exit status > > ################################## > > > > I have tried all permutations of purging via ppa-purge, apt-get > > remove, apt-get purge, followed by the ppa installation instructions. > > All routes lead back to the same error and same message in the instant > > log file. > > > > As another data point: On a different computer, a clean install of > > Ubuntu 14.04, followed by a clean install of Fenics 1.6 (via ppa) > > yields a perfectly working copy. > > > > I have found a similar account of the problem here, > > > > http://fenicsproject.org/qa/7402/expression-does-not-work-anymore > > > > but have been unable to resolve it from the supplied information. > > > > Many thanks for any help you can provide. > > > > - Chris > > _______________________________________________ > > fenics-support mailing list > > [email protected] > > http://fenicsproject.org/mailman/listinfo/fenics-support > >
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