Dear Alexander Hansen, Thank you so much for the prompt reply. Also thank you so much for your valuable tip. I have been struggling with this challenge since the previous wekend. Only after wipe out Macports I managed to install BioPerl. The commenting out strategy (#) by modifying the .profile did not work, perhaps it will solve the incompatibility problem before installing the Macports again in my next attempt. But I'm very satisfied as it is.
Kind regards, Pablo Citando Alexander Hansen <alexanderk.han...@gmail.com>: > On 8/22/13 3:22 AM, prhard...@ualg.pt wrote: >> Hi there, >> >> I need your assistance. I'm trying to install BioPerl with Fink, but >> got a warning follow the the error message with tk-pm5124-804.031-2 >> during the procedure. I could not find a reasanable answer on FAQ >> forum or even google. Could you give me a tip? >> >> The error message: >> > > <snip> > >> Scanning binaries for incorrect dyld linking... >> ./blib/arch/auto/Tk/Tk.bundle uses /opt/local/lib/libX11.6.dylib >> ./blib/arch/auto/Tk/PNG/PNG.bundle uses /opt/local/lib/libz.1.dylib >> Please fix build process to get consistent use of fink's libraries. > > <snip> > >> >> Also include the following system information: >> Package manager version: 0.35.1 >> Distribution version: selfupdate-rsync Wed Aug 21 20:11:53 2013, >> 10.7, x86_64 >> Trees: local/main stable/main >> Xcode.app: 4.6.3 >> Xcode command-line tools: 4.6.0.0.1.1365549073 >> tk-pm5124-804.031-2 is set to build with only one job. >> >> >> > > The problem is that you have Macports installed and the build for > tk-pm5124 has used its libraries. You can have both Macports and > Fink, but you will want to deactivate Macports when you build with > Fink, and vice versa. Having the two cross-link can result in > runtime problems because of incompatible versions of libraries, and > also can result in breakage in one system if you remove the other. > > It should suffice to modify the .profile file in your home directory > (or whatever you are actually using) temporarily by commenting out > whatever Macports uses to set its environment--I don't use it > myself, so I don't know what the exact line to look for is--and then > start a new terminal window. > > You'd do the same thing to deactivate Fink by commenting out the > line that mentions /sw/bin/init.sh (or /sw/bin/init.csh, depending > on what shell you're using). > -- > Alexander Hansen, Ph.D. > Fink User Liaison > My package updates: http://finkakh.wordpress.com/ > > ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. ------------------------------------------------------------------------------ Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk _______________________________________________ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
