I'm glad it worked. I forgot to suggest another option which was a little less lethal than a removal, which is to rename temporarily the directory where it resides, e.g. "sudo mv /opt/local /opt/local.bak"; and similarly if you need Fink out of the way use "sudo mv /sw /sw.bak".
That has essentially the same effect as a full uninstall, but allows you to restore Macports (or Fink) quickly. On 8/22/13 8:23 AM, prhard...@ualg.pt wrote: > Dear Alexander Hansen, > > Thank you so much for the prompt reply. > Also thank you so much for your valuable tip. I have been struggling > with this challenge since the previous wekend. > Only after wipe out Macports I managed to install BioPerl. The > commenting out strategy (#) by modifying the .profile did not work, > perhaps it will solve the incompatibility problem before installing > the Macports again in my next attempt. But I'm very satisfied as it is. > > Kind regards, > Pablo > > > > Citando Alexander Hansen <alexanderk.han...@gmail.com>: > >> On 8/22/13 3:22 AM, prhard...@ualg.pt wrote: >>> Hi there, >>> >>> I need your assistance. I'm trying to install BioPerl with Fink, but >>> got a warning follow the the error message with tk-pm5124-804.031-2 >>> during the procedure. I could not find a reasanable answer on FAQ >>> forum or even google. Could you give me a tip? >>> >>> The error message: >>> >> >> <snip> >> >>> Scanning binaries for incorrect dyld linking... >>> ./blib/arch/auto/Tk/Tk.bundle uses /opt/local/lib/libX11.6.dylib >>> ./blib/arch/auto/Tk/PNG/PNG.bundle uses /opt/local/lib/libz.1.dylib >>> Please fix build process to get consistent use of fink's libraries. >> >> <snip> >> >>> >>> Also include the following system information: >>> Package manager version: 0.35.1 >>> Distribution version: selfupdate-rsync Wed Aug 21 20:11:53 2013, >>> 10.7, x86_64 >>> Trees: local/main stable/main >>> Xcode.app: 4.6.3 >>> Xcode command-line tools: 4.6.0.0.1.1365549073 >>> tk-pm5124-804.031-2 is set to build with only one job. >>> >>> >>> >> >> The problem is that you have Macports installed and the build for >> tk-pm5124 has used its libraries. You can have both Macports and >> Fink, but you will want to deactivate Macports when you build with >> Fink, and vice versa. Having the two cross-link can result in >> runtime problems because of incompatible versions of libraries, and >> also can result in breakage in one system if you remove the other. >> >> It should suffice to modify the .profile file in your home directory >> (or whatever you are actually using) temporarily by commenting out >> whatever Macports uses to set its environment--I don't use it >> myself, so I don't know what the exact line to look for is--and then >> start a new terminal window. >> >> You'd do the same thing to deactivate Fink by commenting out the >> line that mentions /sw/bin/init.sh (or /sw/bin/init.csh, depending >> on what shell you're using). >> -- >> Alexander Hansen, Ph.D. >> Fink User Liaison >> My package updates: http://finkakh.wordpress.com/ >> >> > > > ------------------------------------------------------------------------------ Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk _______________________________________________ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
