>> I've been trying to update using plain self update, and rsyn, none are 
>> working, error below

>>

localhost:Downloads alisonwaller$ /sw/bin/fink selfupdate 
UNIVERSAL->import is deprecated and will be removed in a future perl at 
/sw/lib/perl5/Fink/Checksum.pm line 27
UNIVERSAL->import is deprecated and will be removed in a future perl at 
/sw/lib/perl5/Fink/Checksum.pm line 27
rsync -az -v  rsync://distfiles.master.finkmirrors.net/finkinfo//TIMESTAMP 
/sw/fink/TIMESTAMP.tmp
receiving file list ... done

sent 37 bytes  received 86 bytes  82.00 bytes/sec
total size is 11  speedup is 0.09
I will now run the rsync command to retrieve the latest package descriptions. 
/usr/bin/su _unknown -c "rsync -rtz --delete-after --delete -v   
--include='10.4/' --include='10.4/stable/' --include='10.4/stable/main/' 
--include='10.4/stable/main/finkinfo/' --include='10.4/stable/main/finkinfo/*/' 
--include='10.4/stable/main/finkinfo/*' 
--include='10.4/stable/main/finkinfo/**/*' --include='10.4/' 
--include='10.4/stable/' --include='10.4/stable/crypto/' 
--include='10.4/stable/crypto/finkinfo/' 
--include='10.4/stable/crypto/finkinfo/*/' 
--include='10.4/stable/crypto/finkinfo/*' 
--include='10.4/stable/crypto/finkinfo/**/*' --include='10.4/' 
--include='10.4/unstable/' --include='10.4/unstable/main/' 
--include='10.4/unstable/main/finkinfo/' 
--include='10.4/unstable/main/finkinfo/*/' 
--include='10.4/unstable/main/finkinfo/*' 
--include='10.4/unstable/main/finkinfo/**/*' --include='10.4/' 
--include='10.4/unstable/' --include='10.4/unstable/crypto/' 
--include='10.4/unstable/crypto/finkinfo/' 
--include='10.4/unstable/crypto/finkinfo/*/' 
--include='10.4/unstable/crypto/fink
 info/*' --include='10.4/unstable/crypto/finkinfo/**/*' --include='VERSION' 
--include='DISTRIBUTION' --include='README' --exclude='**' 
'rsync://distfiles.master.finkmirrors.net/finkinfo' '/sw/fink/'"
### execution of /usr/bin/su failed, exit code 1

On Sep 20, 2013, at 4:06 PM, Alexander Hansen <alexanderk.han...@gmail.com> 
wrote:

> On 9/20/13 5:57 AM, Alison Waller wrote:
>> because I get this error:
>> 
>> /sw2/bin/fink install bioperl-pm5124
>> Information about 295 packages read in 4 seconds.
>> Failed: no package found for specification 'bioperl-pm5124'!
>> 
>> 
>> On Sep 20, 2013, at 2:49 PM, Martin Costabel <costa...@wanadoo.fr> wrote:
>> 
>>> On 20/09/13 14:16, Alison Waller wrote:
>>>> Thanks, editing these lines solved the problem.
>>>> 
>>>> btw, I had renames gcc, so I could easily return everything to the 
>>>> original state.
>>>> 
>>>> However, on  a separate note I found out that fink doesn't support bioperl 
>>>> for perl5.12.4 (which is what comes with OS 10.8.4, so it was useless 
>>>> anyways.
>>> 
>>> Why do you say this? I see bioperl-pm5124 here. I don't know what it is, 
>>> but it exists in Fink.
>>> 
>>> --
>>> Martin
>>> 
>>> 
>> 
>> ____________________________________
>> Alison Waller Ph.D
>> Postdoctoral Fellow
>> Bork Group - EMBL Heidelberg
>> alison.wal...@embl.de
>> +49 6221 387-8296
>> 
> 
> That indicates that you haven't used "fink selfupdate" to download package 
> descriptions.
> 
> -- 
> Alexander Hansen, Ph.D.
> Fink User Liaison
> My package updates: http://finkakh.wordpress.com/

____________________________________
Alison Waller Ph.D
Postdoctoral Fellow
Bork Group - EMBL Heidelberg
alison.wal...@embl.de
+49 6221 387-8296





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