You’re right. Fink updated openmpi and openmpi-shlibs together. Fink will not let me update openmpi without also updating openmpi-shlibs. I tried updating only openmpi-shlibs. It also fails The output suggests fink was also attempting to update openmpi?
-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent/include -I/sw/include /sw/bin/flag-sort: /usr/bin/clang -DHAVE_CONFIG_H -DOMPI_BUILDING=1 -O3 -DNDEBUG -fno-strict-aliasing -DHAVE_ROMIOCONF_H -MT adio/ad_testfs/ad_testfs_open.lo -MD -MP -MF adio/ad_testfs/.deps/ad_testfs_open.Tpo -c adio/ad_testfs/ad_testfs_open.c -fno-common -DPIC -o adio/ad_testfs/.libs/ad_testfs_open.o -I. -I./adio/include -I./../../../../../opal/include -I./../../../../../ompi/include -I./include -I./mpi-io -I./adio/include -I./include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../.. -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../../opal/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/adio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/mpi-io -I/sw/src/fink.build/openmpi-1.10.4-1/open/sw/bin/flag-sort: /usr/bin/clang -DHAVE_CONFIG_H -DOMPI_BUILDING=1 -O3 -DNDEBUG -fno-strict-aliasing -DHAVE_ROMIOCONF_H -MT adio/ad_ufs/ad_ufs_open.lo -MD -MP -MF adio/ad_ufs/.deps/ad_ufs_open.Tpo -c adio/ad_ufs/ad_ufs_open.c -fno-common -DPIC -o adio/ad_ufs/.libs/ad_ufs_open.o -I. -I./adio/include -I./../../../../../opal/include -I./../../../../../ompi/include -I./include -I./mpi-io -I./adio/include -I./include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../.. -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../../opal/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/adio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/mpi-io -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/r4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/adio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent/include -I/sw/include /sw/bin/flag-sort: /usr/bin/clang -DHAVE_CONFIG_H -DOMPI_BUILDING=1 -O3 -DNDEBUG -fno-strict-aliasing -DHAVE_ROMIOCONF_H -MT adio/common/ad_fcntl.lo -MD -MP -MF adio/common/.deps/ad_fcntl.Tpo -c adio/common/ad_fcntl.c -fno-common -DPIC -o adio/common/.libs/ad_fcntl.o -I. -I./adio/include -I./../../../../../opal/include -I./../../../../../ompi/include -I./include -I./mpi-io -I./adio/include -I./include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../.. -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../../opal/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/adio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/mpi-io -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/a/sw/bin/flag-sort: /usr/bin/clang -DHAVE_CONFIG_H -DOMPI_BUILDING=1 -O3 -DNDEBUG -fno-strict-aliasing -DHAVE_ROMIOCONF_H -MT adio/common/ad_end.lo -MD -MP -MF adio/common/.deps/ad_end.Tpo -c adio/common/ad_end.c -fno-common -DPIC -o adio/common/.libs/ad_end.o -I. -I./adio/include -I./../../../../../opal/include -I./../../../../../ompi/include -I./include -I./mpi-io -I./adio/include -I./include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../.. -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../../opal/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/adio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/mpi-io -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/adio/inclmpi-1.10.4/ompi/mca/io/romio/romio/adio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent/include -I/sw/include omio/romio/adio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent/include -I/sw/include dio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent/include -I/sw/include ude -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent/include -I/sw/include /sw/bin/flag-sort: /usr/bin/clang -DHAVE_CONFIG_H -DOMPI_BUILDING=1 -O3 -DNDEBUG -fno-strict-aliasing -DHAVE_ROMIOCONF_H -MT adio/ad_testfs/ad_testfs_resize.lo -MD -MP -MF adio/ad_testfs/.deps/ad_testfs_resize.Tpo -c adio/ad_testfs/ad_testfs_resize.c -fno-common -DPIC -o adio/ad_testfs/.libs/ad_testfs_resize.o -I. -I./adio/include -I./../../../../../opal/include -I./../../../../../ompi/include -I./include -I./mpi-io -I./adio/include -I./include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../.. -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../../opal/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/adio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/mpi-io -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/adio/include -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent/include -I/sw/include make[4]: Leaving directory '/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio' make[3]: *** [all-recursive] Error 1 make[2]: *** [all-recursive] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all-recursive] Error 1 ### execution of /tmp/fink.Ghcl8 failed, exit code 2 ### execution of /tmp/fink.8N5eS failed, exit code 2 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-openmpi-1.10.4-1 (Reading database ... 265512 files and directories currently installed.) Removing fink-buildlock-openmpi-1.10.4-1 ... Failed: phase compiling: openmpi-1.10.4-1 failed > On Nov 20, 2016, at 3:41 PM, Alexander Hansen <alexanderk.han...@gmail.com> > wrote: > > >> On Nov 18, 2016, at 21:08, Marc Boxerman <mboxer...@mac.com> wrote: >> >> I cannot update openmpi. Here’s the output immediately before and at the >> error: >> >> -I/sw/include >> /sw/bin/flag-sort: /usr/bin/clang -DHAVE_CONFIG_H -DOMPI_BUILDING=1 -O3 >> -DNDEBUG -fno-strict-aliasing -DHAVE_ROMIOCONF_H -MT >> adio/ad_nfs/ad_nfs_features.lo -MD -MP -MF >> adio/ad_nfs/.deps/ad_nfs_features.Tpo -c adio/ad_nfs/ad_nfs_features.c >> -fno-common -DPIC -o adio/ad_nfs/.libs/ad_nfs_features.o -I. >> -I./adio/include -I./../../../../../opal/include >> -I./../../../../../ompi/include -I./include -I./mpi-io -I./adio/include >> -I./include >> -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../.. >> >> -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/../../../../../opal/include >> >> -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include >> >> -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/adio/include >> >> -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/include >> >> -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/mpi-io >> >> -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio/adio/include >> >> -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent >> >> -I/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/opal/mca/event/libevent2021/libevent/include >> -I/sw/include >> libtool: error: Failed to create 'mpi-io/.libs' >> make[4]: *** [Makefile:3396: mpi-io/get_posn.lo] Error 1 >> libtool: error: Failed to create 'mpi-io/.libs' >> make[4]: *** [Makefile:3396: mpi-io/get_size.lo] Error 1 >> libtool: error: Failed to create 'mpi-io/.libs' >> make[4]: *** [Makefile:3396: mpi-io/iread.lo] Error 1 >> make[4]: Leaving directory >> '/sw/src/fink.build/openmpi-1.10.4-1/openmpi-1.10.4/ompi/mca/io/romio/romio' >> make[3]: *** [all-recursive] Error 1 >> make[2]: *** [all-recursive] Error 1 >> make[1]: *** [all-recursive] Error 1 >> make: *** [all-recursive] Error 1 >> ### execution of /tmp/fink.zJauj failed, exit code 2 >> ### execution of /tmp/fink.x0WgO failed, exit code 2 >> Removing runtime build-lock... >> Removing build-lock package... >> /sw/bin/dpkg-lockwait -r fink-buildlock-openmpi-1.10.4-1 >> (Reading database ... 265512 files and directories currently installed.) >> Removing fink-buildlock-openmpi-1.10.4-1 ... >> Failed: phase compiling: openmpi-1.10.4-1 failed >> >> I’m still running El Capitan. >> >> Thank you for any assistance, >> >> Marc >> > > How many build jobs is fink set up for? If it’s more than one could you make > an another attempt with only one job? The output kind of looks like there > might have been an earlier failure in another build thread. > > -- > Alexander Hansen, Ph.D. > Fink User Liaison > ------------------------------------------------------------------------------ _______________________________________________ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
