Thanks, Alexander. I logged off all other users and quit all applications except Finder and Terminal. Openmpi appears to have built successfully. But oddly, fink list -o still lists openmpi and openmpi-shlibs as uninstalled at the version numbers I just built.
Here’s how the build ended. It looks normal to me. Reverting ownership of install dir to root Writing control file... Writing package script postinst... Writing package script prerm... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-openmpi-1.10.4-1 /sw/fink/10.11/stable/main/binary-darwin-x86_64/devel dpkg-deb: building package `openmpi' in `/sw/fink/10.11/stable/main/binary-darwin-x86_64/devel/openmpi_1.10.4-1_darwin-x86_64.deb'. Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-openmpi-shlibs-1.10.4-1 /sw/fink/10.11/stable/main/binary-darwin-x86_64/devel dpkg-deb: building package `openmpi-shlibs' in `/sw/fink/10.11/stable/main/binary-darwin-x86_64/devel/openmpi-shlibs_1.10.4-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-openmpi-1.10.4-1 (Reading database ... 265512 files and directories currently installed.) Removing fink-buildlock-openmpi-1.10.4-1 ... Updating the list of locally available binary packages. Scanning dists/stable/main/binary-darwin-x86_64 New package: dists/stable/main/binary-darwin-x86_64/devel/openmpi-shlibs_1.10.4-1_darwin-x86_64.deb New package: dists/stable/main/binary-darwin-x86_64/devel/openmpi_1.10.4-1_darwin-x86_64.deb Marc > On Nov 22, 2016, at 10:59 AM, Alexander Hansen <alexanderk.han...@gmail.com> > wrote: > > >> On Nov 22, 2016, at 08:31, Alexander Hansen <alexanderk.han...@gmail.com> >> wrote: >> >> >>> On Nov 21, 2016, at 22:37, Marc Boxerman <mboxer...@mac.com> wrote: >>> >>> Alexander, >>> >>> The build still failed using fink -l build openmpi. I’m not sure what you >>> mean by the output getting “swallowed” but the build output went to stdout >>> as well as to the log file. I’m attaching the log file for your review. >>> >>> Thanks for your continued assistance. >>> >>> Marc >>> >> >> By “swallowed” I mean: “overwritten and lost”, e.g. due to something trying >> to be cute with control characters. >> >> I’ll generate a log file here and do a diff. >> >> -- >> Alexander Hansen, Ph.D. >> Fink User Liaison >> > > I had a log file from yesterday’s test. I found the issue, I think. There > was indeed an earlier error: > > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > make[4]: *** [Makefile:3396: adio/common/ad_fstype.lo] Error 128 > make[4]: *** Waiting for unfinished jobs.... > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > make[4]: *** [Makefile:3396: adio/common/ad_iread_fake.lo] Error 128 > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > make[4]: *** [Makefile:3396: adio/common/ad_opencoll_scalable.lo] Error 128 > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > make[4]: *** [Makefile:3396: adio/common/ad_subarray.lo] Error 129 > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > make[4]: *** [Makefile:3396: adio/common/ad_write_nolock.lo] Error 128 > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > make[4]: *** [Makefile:3396: adio/common/ad_write_coll.lo] Error 128 > make[4]: *** [Makefile:3396: adio/common/ad_write_str_naive.lo] Error 129 > ./libtool: fork: Resource temporarily unavailable > make[4]: *** [Makefile:3396: adio/common/ad_iwrite_fake.lo] Error 129 > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > ./libtool: fork: Resource temporarily unavailable > > : error: Failed to create 'adio/common/.libs' > make[4]: *** [Makefile:3396: adio/common/ad_iwrite.lo] Error 1 > > OS X has a fairly ungenerous default number of processes and number of files > that it allows a user to open, so the build might well be triggering that, > particularly if you’re using your system for other stuff. > > Fortunately, there are a few options: > > 1) This version of openmpi is currently available in the 10.11 binary > distribution. > > 2) If you really want a local build, try it at a point in time where you > don’t have a lot of other files/processes open. Logging out or rebooting > > 3) CAUTION: Modify the limits. This involves mucking around in the system > area, however. Anyway, if you’re feeling bold, here’s a link: > http://blog.dekstroza.io/ulimit-shenanigans-on-osx-el-capitan/ . Note that > I haven’t tried the method myself, because my usual solution when I want a > local build and forking won’t work is to do option #2 and do a build when I > don’t need the machine. > > -- > Alexander Hansen, Ph.D. > Fink User Liaison > ------------------------------------------------------------------------------ _______________________________________________ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
