Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/pythonmods
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv3401
Added Files:
biom-format-py.info
Log Message:
new pkg biom-format 1.1.2
--- NEW FILE: biom-format-py.info ---
Info2: <<
Package: biom-format-py%type_pkg[python]
Version: 1.1.2
Revision: 1
Description: Biological Observation Matrix Format
Type: python (2.7)
License: GPL
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Depends: <<
cython-py%type_pkg[python],
numpy-py%type_pkg[python],
python%type_pkg[python]
<<
Source:
ftp://thebeast.colorado.edu/pub/biom-format-releases/biom-format-%v.tar.gz
Source-MD5: 66c7b9cc8dc199e37f96aa64aaa77d15
Source-Checksum: SHA1(7ca5039e19bbfeb559bddc45b1ecbd7a3d2eaeea)
GCC: 4.0
CompileScript: <<
%p/bin/python%type_raw[python] setup.py build
<<
InfoTest: <<
TestDepends: <<
<<
TestScript: <<
PYTHONPATH=`pwd`/python-code:$PYTHONPATH
%p/bin/python%type_raw[python] python-code/tests/all_tests.py || exit 2
<<
<<
InstallScript: <<
#!/bin/sh -ev
%p/bin/python%type_raw[python] setup.py install --root %d --prefix %p
for file in add_metadata biom_validator convert_biom
print_biom_python_config print_biom_table_summary subset_biom
test_biom_validator; do
mv %i/bin/$file.py %i/bin/$file.py-py%type_pkg[python]
done
<<
DocFiles: COPYING ChangeLog README.md
PostInstScript: <<
update-alternatives --install %p/bin/add_metadata.py add_metadata
%p/bin/add_metadata.py-py%type_pkg[python] %type_pkg[python] \
--slave %p/bin/biom_validator.py biom_validator
%p/bin/biom_validator.py-py%type_pkg[python] \
--slave %p/bin/convert_biom.py convert_biom
%p/bin/convert_biom.py-py%type_pkg[python] \
--slave %p/bin/print_biom_python_config.py
print_biom_python_config %p/bin/print_biom_python_config.py-py%type_pkg[python]
\
--slave %p/bin/print_biom_table_summary.py
print_biom_table_summary %p/bin/print_biom_table_summary.py-py%type_pkg[python]
\
--slave %p/bin/subset_biom.py subset_biom
%p/bin/subset_biom.py-py%type_pkg[python] \
--slave %p/bin/test_biom_validator.py test_biom_validator
%p/bin/test_biom_validator.py-py%type_pkg[python] \
<<
PreRmScript: <<
if [ $1 != "upgrade" ]; then
update-alternatives --remove add_metadata
%p/bin/add_metadata.py-py%type_pkg[python]
fi
<<
Homepage: http://biom-format.org/
DescDetail: <<
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth Microbiome
Project and is a Genomics Standards Consortium candidate project.
<<
<<
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