Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/pythonmods
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv7336
Added Files:
pycogent-py.info
Log Message:
new pkg pycogent 1.5.3
--- NEW FILE: pycogent-py.info ---
Info2: <<
Package: pycogent-py%type_pkg[python]
Version: 1.5.3
Revision: 1
Description: Library for genomic biology
Type: python (2.7)
License: GPL
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Depends: <<
cython-py%type_pkg[python],
matplotlib-py%type_pkg[python],
numpy-py%type_pkg[python],
python%type_pkg[python]
<<
Recommends: <<
mpi4py-py%type_pkg[python],
mysql-python-py%type_pkg[python],
sqlalchemy-py%type_pkg[python]
<<
Source: mirror:sourceforge:pycogent/PyCogent/%v/PyCogent-%v.tgz
Source-MD5: 90c1e0e1f42eda79a3325e6d32f5256b
Source-Checksum: SHA1(cca88704e9c0b91b89087beac28eabca4c99c102)
CompileScript: <<
chmod 644 ChangeLog README
%p/bin/python%type_raw[python] setup.py build
<<
### Some tests fail when run as fink-bld
### https://github.com/pycogent/pycogent/issues/39
#InfoTest: <<
# TestScript: <<
# #!/bin/sh -ev
# export PYTHON_TEST_EXE=%p/bin/python%type_raw[python]
# sh run_tests || exit 2
# <<
#<<
InstallScript: <<
#!/bin/sh -ev
%p/bin/python%type_raw[python] setup.py install --root %d --prefix %p
<<
DocFiles: ChangeLog README
Homepage: http://pycogent.org/
DescDetail: <<
PyCogent is a software library for genomic biology. It is a fully
integrated and thoroughly tested framework for: controlling third-party
applications; devising workflows; querying databases; conducting novel
probabilistic analyses of biological sequence evolution; and generating
publication quality graphics. It is distinguished by many unique built-in
capabilities (such as true codon alignment) and the frequent addition of
entirely new methods for the analysis of genomic data.
Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC,
Eaton M, Hamady M, Lindsay H, Liu Z, et al.: PyCogent: a toolkit for
making sense from sequence. Genome Biol 2007, 8(8):R171.
<<
<<
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