Hi Koen:
Thanks for maintaining EMBOSS. I just tried installing on a new
intel iMac and got the following error:
ajjava.c:93:19: error: crypt.h: No such file or directory
I've got i system-openssl-dev 0.9.7-6
Placeholder to force the use of the system SSL
Thanks.
Bill
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\"
-DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"EMBOSS\" -
DVERSION=\"4.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -
DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -
DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -
DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1
-DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1
-DHAVE_UNISTD_H=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1
-DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1
-DPLD_png=1 -I. -I. -DAJAX_FIXED_ROOT=\"/sw/src/fink.build/
emboss-4.1.0-1/EMBOSS-4.1.0/emboss\" -DPREFIX=\"/sw\" -I../plplot -
DPOSIX_MALLOC_THRESHOLD=10 -DAJ_MACOSXLF -Dstat64=stat -I/sw/include -
DLENDIAN -I/System/Library/Frameworks/JavaVM.framework/Versions/1.4.2/
Home -DHAVE_JAVA -I/System/Library/Frameworks/JavaVM.framework/
Versions/1.4.2/Home/include -DNO_AUTH -O1 -c ajjava.c -fno-common -
DPIC -o .libs/ajjava.o
ajjava.c:93:19: error: crypt.h: No such file or directory
ajjava.c: In function 'Java_org_emboss_jemboss_parser_Ajax_seqsetType':
ajjava.c:335: warning: 'ajSeqsetLen' is deprecated (declared at
ajseq.h:240)
ajjava.c:337: warning: 'ajSeqsetTotweight' is deprecated (declared at
ajseq.h:259)
ajjava.c: In function 'Java_org_emboss_jemboss_parser_Ajax_fork':
ajjava.c:1251: warning: passing argument 1 of 'ajSysStrtokR' discards
qualifiers from pointer target type
ajjava.c: In function 'make_array':
ajjava.c:1525: warning: passing argument 1 of 'ajSysStrtokR' discards
qualifiers from pointer target type
make[1]: *** [ajjava.lo] Error 1
make: *** [all-recursive] Error 1
### execution of make failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-emboss-4.1.0-1
(Reading database ... 144792 files and directories currently installed.)
Removing fink-buildlock-emboss-4.1.0-1 ...
Failed: phase compiling: emboss-4.1.0-1 failed
Before reporting any errors, please run "fink selfupdate" and
try again. If you continue to have issues, please check to see if the
FAQ on fink's website solves the problem. If not, ask on the fink-users
or fink-beginners mailing lists. As a last resort, you can try e-
mailing
the maintainer directly:
Koen van der Drift <[EMAIL PROTECTED]>
Note that many fink package maintainers do not have access to all
possible
hardware configurations, so you may have better luck on the mailing
lists.
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
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