Thanks monipol, I have fixed that in cvs.

Scott: can you let us know if it works?

- Koen.


On Jan 5, 2010, at 8:57 PM, monipol wrote:

> For the record, the standard fix is to add
>
> --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
>
> to ConfigureParams.
>
> On 05/01/2010, at 20:01, Koen van der Drift wrote:
>
>> Scott,
>>
>> Thanks for your report. I don't have Snow Leopard, so am unable to  
>> test emboss-kaptain on that system.
>>
>> But more importantly, emboss-kaptain is no longer updated by the  
>> developer with newer versions of emboss. I recommend you install  
>> kemboss instead which works with the latest version of emboss.
>>
>> - Koen.
>>
>>
>> -----Original Message-----
>>> From: "Scott R. Santos" <[email protected]>
>>> Sent: Jan 5, 2010 2:54 PM
>>> To: [email protected]
>>> Cc: [email protected], [email protected]
>>> Subject: Failure compiling kaptain-0.72-1013
>>>
>>>
>>> Hi everyone,
>>>
>>> Received the following error while compiling kaptain-0.72-1013 as  
>>> part of emboss-kaptain:
>>>
>>> The following package will be installed or updated:
>>> emboss-kaptain
>>> The following 12 additional packages will be installed:
>>> autoconf automake1.11 emboss emboss-ajax6-shlibs emboss-nucleus6- 
>>> shlibs emboss-plplot3-shlibs gd2 gd2-shlibs kaptain m4 nedit  
>>> texi2html
>>> Do you want to continue? [Y/n] y
>>> Setting runtime build-lock...
>>> dpkg-deb -b /sw/src/fink.build/root-fink-buildlock- 
>>> kaptain-0.72-1013 /sw/src/fink.build
>>> dpkg-deb: building package `fink-buildlock-kaptain-0.72-1013' in `/ 
>>> sw/src/fink.build/fink-buildlock- 
>>> kaptain-0.72-1013_2010.01.05-13.32.40_darwin-i386.deb'.
>>> Installing build-lock package...
>>> /sw/bin/dpkg-lockwait -i /sw/src/fink.build/fink-buildlock- 
>>> kaptain-0.72-1013_2010.01.05-13.32.40_darwin-i386.deb
>>> Selecting previously deselected package fink-buildlock- 
>>> kaptain-0.72-1013.
>>> (Reading database ... 14576 files and directories currently  
>>> installed.)
>>> Unpacking fink-buildlock-kaptain-0.72-1013 (from ../fink-buildlock- 
>>> kaptain-0.72-1013_2010.01.05-13.32.40_darwin-i386.deb) ..
>>> Setting up fink-buildlock-kaptain-0.72-1013  
>>> (2010.01.05-13.32.40) ...
>>> gzip -dc /sw/src/kaptain-0.72.tar.gz | /sw/bin/tar -xf -  --no- 
>>> same-owner --no-same-permissions
>>> perl -pi -e 's/install-info --version/false/' doc/Makefile.in
>>> /configure --prefix=/sw --infodir=/sw/share/info --with-qt- 
>>> includes=/sw/include/qt --with-qt-libraries=/sw/lib/qt3  --with-qt- 
>>> dir=/sw --with-extra-includes=/sw/include --with-extra-libs=/sw/lib
>>> checking build system type... i386-apple-darwin10.2.0
>>> checking host system type... i386-apple-darwin10.2.0
>>> checking target system type... i386-apple-darwin10.2.0
>>> checking for a BSD-compatible install... /usr/bin/install -c
>>> checking for -p flag to install... yes
>>> checking whether build environment is sane... yes
>>> checking for gawk... no
>>> checking for mawk... no
>>> checking for nawk... no
>>> checking for awk... awk
>>> checking whether make sets $(MAKE)... yes
>>> checking for style of include used by make... GNU
>>> checking for gcc... gcc
>>> checking for C compiler default output... a.out
>>> checking whether the C compiler works... yes
>>> checking whether we are cross compiling... no
>>> checking for suffix of executables...
>>> checking for suffix of object files... o
>>> checking whether we are using the GNU C compiler... yes
>>> checking whether gcc accepts -g... yes
>>> checking for gcc option to accept ANSI C... none needed
>>> checking dependency style of gcc... gcc3
>>> checking how to run the C preprocessor... gcc -E
>>> checking for g++... g++
>>> checking whether we are using the GNU C++ compiler... yes
>>> checking whether g++ accepts -g... yes
>>> checking dependency style of g++... gcc3
>>> checking whether g++ supports -Wundef... yes
>>> checking whether g++ supports -Wno-long-long... yes
>>> checking whether g++ supports -Wnon-virtual-dtor... yes
>>> checking whether g++ supports -fno-exceptions... yes
>>> checking whether g++ supports -fno-check-new... yes
>>> checking whether g++ supports -fexceptions... yes
>>> checking how to run the C++ preprocessor... g++ -E
>>> checking whether g++ supports -frepo... yes
>>> not using lib directory suffix
>>> checking for ld used by GCC... /usr/libexec/gcc/i686-apple- 
>>> darwin10/4.2.1/ld
>>> checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ 
>>> ld) is GNU ld... no
>>> checking for /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld option  
>>> to reload object files... -r
>>> checking for BSD-compatible nm... /usr/bin/nm
>>> checking for a sed that does not truncate output...
>>> checking whether ln -s works... yes
>>> checking how to recognise dependant libraries... file_magic Mach-O  
>>> dynamically linked shared library
>>> checking for egrep... grep -E
>>> checking for ANSI C header files... yes
>>> checking for sys/types.h... yes
>>> checking for sys/stat.h... yes
>>> checking for stdlib.h... yes
>>> checking for string.h... yes
>>> checking for memory.h... yes
>>> checking for strings.h... yes
>>> checking for inttypes.h... yes
>>> checking for stdint.h... yes
>>> checking for unistd.h... yes
>>> checking dlfcn.h usability... yes
>>> checking dlfcn.h presence... yes
>>> checking for dlfcn.h... yes
>>> checking the maximum length of command line arguments... 65536
>>> checking command to parse /usr/bin/nm output from gcc object... ok
>>> checking for objdir... .libs
>>> checking for ranlib... ranlib
>>> checking for strip... strip
>>> checking if gcc static flag  works... yes
>>> checking if gcc supports -fno-rtti -fno-exceptions... no
>>> checking for gcc option to produce PIC... -fno-common
>>> checking if gcc PIC flag -fno-common works... yes
>>> checking if gcc supports -c -o file.o... yes
>>> checking whether the gcc linker (/usr/libexec/gcc/i686-apple- 
>>> darwin10/4.2.1/ld) supports shared libraries... yes
>>> checking whether -lc should be explicitly linked in... yes
>>> checking how to hardcode library paths into programs... immediate
>>> checking whether stripping libraries is possible... no
>>> checking dynamic linker characteristics... darwin10.2.0 dyld
>>> checking if libtool supports shared libraries... yes
>>> checking whether to build shared libraries... yes
>>> checking whether to build static libraries... no
>>> configure: creating libtool
>>> appending configuration tag "CXX" to libtool
>>> checking whether the g++ linker (/usr/libexec/gcc/i686-apple- 
>>> darwin10/4.2.1/ld) supports shared libraries... no
>>> checking for g++ option to produce PIC... -fno-common
>>> checking if g++ PIC flag -fno-common works... yes
>>> checking if g++ supports -c -o file.o... yes
>>> checking whether the g++ linker (/usr/libexec/gcc/i686-apple- 
>>> darwin10/4.2.1/ld) supports shared libraries... no
>>> checking whether -lc should be explicitly linked in... yes
>>> checking how to hardcode library paths into programs... immediate
>>> checking whether stripping libraries is possible... no
>>> checking dynamic linker characteristics... darwin10.2.0 dyld
>>> appending configuration tag "GCJ" to libtool
>>> checking if gcj supports -fno-rtti -fno-exceptions... (cached) no
>>> checking for gcj option to produce PIC... -fno-common
>>> checking if gcj PIC flag -fno-common works... no
>>> checking if gcj supports -c -o file.o... no
>>> checking whether the gcj linker (/usr/libexec/gcc/i686-apple- 
>>> darwin10/4.2.1/ld) supports shared libraries... yes
>>> checking whether -lc should be explicitly linked in... yes
>>> checking how to hardcode library paths into programs... immediate
>>> checking whether stripping libraries is possible... no
>>> checking dynamic linker characteristics... darwin10.2.0 dyld
>>> checking for main in -lutil... yes
>>> checking for main in -lcompat... no
>>> checking for crypt in -lcrypt... no
>>> checking for crypt in -lc... yes
>>> checking for socklen_t... socklen_t
>>> checking for dnet_ntoa in -ldnet... no
>>> checking for dnet_ntoa in -ldnet_stub... no
>>> checking for inet_ntoa... yes
>>> checking for connect... yes
>>> checking for remove... yes
>>> checking for shmat... yes
>>> checking crt_externs.h usability... yes
>>> checking crt_externs.h presence... yes
>>> checking for crt_externs.h... yes
>>> checking for _NSGetEnviron... yes
>>> checking for sys/types.h... (cached) yes
>>> checking for stdint.h... (cached) yes
>>> checking for poll in -lpoll... yes
>>> checking CoreAudio/CoreAudio.h usability... yes
>>> checking CoreAudio/CoreAudio.h presence... yes
>>> checking for CoreAudio/CoreAudio.h... yes
>>> checking if res_init needs -lresolv... yes
>>> checking if res_init is available... yes
>>> checking for killpg in -lucb... no
>>> checking for int... yes
>>> checking size of int... 4
>>> checking for long... yes
>>> checking size of long... 4
>>> checking for char *... yes
>>> checking size of char *... 4
>>> checking for char... yes
>>> checking size of char... 1
>>> checking for dlopen in -ldl... yes
>>> checking for shl_unload in -ldld... no
>>> checking for vsnprintf... yes
>>> checking for snprintf... yes
>>> checking for X... configure: error: Can't find X libraries. Please  
>>> check your installation and add the correct paths!
>>> ### execution of ./configure failed, exit code 1
>>> Removing runtime build-lock...
>>> Removing build-lock package...
>>> /sw/bin/dpkg-lockwait -r fink-buildlock-kaptain-0.72-1013
>>> (Reading database ... 14577 files and directories currently  
>>> installed.)
>>> Removing fink-buildlock-kaptain-0.72-1013 ...
>>> Failed: phase compiling: kaptain-0.72-1013 failed
>>>
>>> Before reporting any errors, please run "fink selfupdate" and
>>> try again.  If you continue to have issues, please check to see if  
>>> the
>>> FAQ on fink's website solves the problem.  If not, ask on the fink- 
>>> users
>>> or fink-beginners mailing lists, with a carbon copy to the  
>>> maintainer:
>>>
>>>     Koen van der Drift <[email protected]>
>>>
>>> Note that this is preferable to emailing the maintainer directly,  
>>> since
>>> most fink package maintainers do not have access to all possible
>>> hardware and software configurations.
>>>
>>> *******************************************************************************************************
>>>
>>> System details:
>>>
>>> Freshly updated to 10.6.2 along with Xcode 3.2.1
>>> Darwin 10.2.0 Darwin Kernel Version 10.2.0: Tue Nov  3 10:37:10  
>>> PST 2009; root:xnu-1486.2.11~1/RELEASE_I386 i386
>>>
>>>
>>> *******************************************************************************************************
>>>
>>> All SDK and X11 libraries appear accounted for:
>>>
>>> pkgutil --pkgs
>>>
>>> com.apple.pkg.X11DocumentationLeo
>>> com.apple.pkg.X11SDKLeo
>>> com.apple.pkg.X11User
>>> com.apple.pkg.Xcode3.2.1Update
>>> com.apple.pkg.Xcode3.2.1UpdateNonRelocatable
>>> com.apple.pkg.Xcode3.2.1UpdateSystemSupport
>>> com.apple.pkg.Xcode3.2.1UpdateSystemTools
>>> com.apple.pkg.Xcode3.2.1UpdateUNIXDevSupport
>>>
>>> *******************************************************************************************************
>>>
>>> My guess is that the configure script needs to be tweaked for Snow  
>>> Leopard.
>>>
>>> Thanks in advance,
>>>
>>> Scott


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