Pymol-py26 and -py27 crash on startup with a bus error. There is no
terminal output besides "Bus error" and the only output is the crash
log, reproduced below. The system is 10.5/i386/unstable with Apple's
X11. *However*, if I run this same pymol install remotely over ssh from
a computer with xquartz 2.5 installed, the program runs OK. So perhaps
a problem with the latest pymol using Apple's X11?
Process: python2.6 [32843]
Path: /sw/bin/python2.6
Identifier: python2.6
Version: ??? (???)
Code Type: X86 (Native)
Parent Process: bash [32806]
Date/Time: 2010-10-06 08:40:55.747 -0400
OS Version: Mac OS X 10.5.8 (9L31a)
Report Version: 6
Anonymous UUID: 014E63F1-E7A6-4741-9243-26D5FA2891B3
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000008
Crashed Thread: 0
Thread 0 Crashed:
0 libGL.1.dylib 0x0058d832 driMesaCreateContext + 27
1 libGL.1.dylib 0x00570299 CreateContext + 517
2 libfreeglut.3.dylib 0x0051680c fghCreateNewContext + 524
3 libfreeglut.3.dylib 0x00516b13 fgOpenWindow + 531
4 libfreeglut.3.dylib 0x00513dc7 fgCreateWindow + 295
5 libfreeglut.3.dylib 0x00515a00 glutCreateWindow + 128
Thread 1:
0 libSystem.B.dylib 0x933f144e __semwait_signal + 10
1 libSystem.B.dylib 0x9341bdcd
pthread_cond_wait$UNIX2003 + 73
2 libGLProgrammability.dylib 0x9276fb32 glvmDoWork + 162
3 libSystem.B.dylib 0x9341b155 _pthread_start + 321
4 libSystem.B.dylib 0x9341b012 thread_start + 34
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0x00000000 ebx: 0x0058d828 ecx: 0x0089190c edx: 0x00000000
edi: 0x00891400 esi: 0x00898200 ebp: 0xbfffe908 esp: 0xbfffe8d0
ss: 0x0000001f efl: 0x00010282 eip: 0x0058d832 cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
cr2: 0x00000008
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<d25c63378a5029648ffd4b4669be31bf> /usr/lib/libbsm.dylib
0x97047000 - 0x97127fff libobjc.A.dylib ??? (???)
<3ca288b625a47bbcfe378158e4dc328f> /usr/lib/libobjc.A.dylib
0x97128000 - 0x971a5feb com.apple.audio.CoreAudio 3.1.2 (3.1.2)
<782a08c44be4698597f4bbd79cac21c6>
/System/Library/Frameworks/CoreAudio.framework/Vers
ions/A/CoreAudio
0x971a6000 - 0x97202ff7 com.apple.htmlrendering 68 (1.1.3)
<fe87a9dede38db00e6c8949942c6bd4f>
/System/Library/Frameworks/Carbon.framework/Versions/A/F
rameworks/HTMLRendering.framework/Versions/A/HTMLRendering
0x97228000 - 0x972bbfff com.apple.ink.framework 101.3 (86)
<bf3fa8927b4b8baae92381a976fd2079>
/System/Library/Frameworks/Carbon.framework/Versions/A/F
rameworks/Ink.framework/Versions/A/Ink
0x972bc000 - 0x972d8ff3 libPng.dylib ??? (???)
<d37524fe884aa164ab7db93d4c803b64>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/
Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x972d9000 - 0x97353ff8 com.apple.print.framework.PrintCore 5.5.4
(245.6) <9ae833544b8249984c07544dbe6a97fa>
/System/Library/Frameworks/ApplicationSer
vices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
0x97354000 - 0x979f4fff com.apple.CoreGraphics 1.409.6 (???)
<572a4bdefeabf73e1d7f96cbfe46bb60>
/System/Library/Frameworks/ApplicationServices.framewo
rk/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x979f5000 - 0x97a88ff3 com.apple.ApplicationServices.ATS 238.14.1
(???) <c9ab7144b2243d0f0f9cd3e264456a6a>
/System/Library/Frameworks/ApplicationServ
ices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
0x97c0e000 - 0x97cd5ff2 com.apple.vImage 3.0 (3.0)
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/v
Image
0x97ce6000 - 0x97d28fef com.apple.NavigationServices 3.5.2 (163)
<7f4f1766414a511bf5bc68920ac85a88>
/System/Library/Frameworks/Carbon.framework/Versio
ns/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices
0xfffe8000 - 0xfffebfff libobjc.A.dylib ??? (???) /usr/lib/libobjc.A.dylib
0xffff0000 - 0xffff1780 libSystem.B.dylib ??? (???)
/usr/lib/libSystem.B.dylib
Hanspeter
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