On Wed, 06 Oct 2010 09:21:43 -0400, Hanspeter Niederstrasser wrote: Pymol-py26 and -py27 crash on startup with a bus error. There is no > terminal output besides "Bus error" and the only output is the crash > log, reproduced below. The system is 10.5/i386/unstable with Apple's > X11. *However*, if I run this same pymol install remotely over ssh from > a computer with xquartz 2.5 installed, the program runs OK. So perhaps > a problem with the latest pymol using Apple's X11? > > Process: python2.6 [32843] > Path: /sw/bin/python2.6 > Identifier: python2.6 > Version: ??? (???) > Code Type: X86 (Native) > Parent Process: bash [32806] > > Date/Time: 2010-10-06 08:40:55.747 -0400 > OS Version: Mac OS X 10.5.8 (9L31a) > Report Version: 6 > Anonymous UUID: 014E63F1-E7A6-4741-9243-26D5FA2891B3 > > Exception Type: EXC_BAD_ACCESS (SIGBUS) > Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000008 > Crashed Thread: 0 > > Thread 0 Crashed: > 0 libGL.1.dylib 0x0058d832 driMesaCreateContext 27 > 1 libGL.1.dylib 0x00570299 CreateContext 517 > 2 libfreeglut.3.dylib 0x0051680c fghCreateNewContext 524 > 3 libfreeglut.3.dylib 0x00516b13 fgOpenWindow 531 > 4 libfreeglut.3.dylib 0x00513dc7 fgCreateWindow 295 > 5 libfreeglut.3.dylib 0x00515a00 glutCreateWindow 128 I vaguely recognize this as an upstream bug in fink's freeglut package: it's using an API or extension that doesn't exist in older x11 codebase and doesn't check for it or have a fallback. Downgrading your freeglut (whichever package supplies libfreeglut.3.dylib) solved it. Perhaps have to rebuild pymol or something else if you have compatibility_version problems after downgrading. See: https://sourceforge.net/tracker/?func=detail&aid=3016611&group_id=1032&atid=101032 dan
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