Ok. Yes. Thanks for your replies all.
This was indeed the problem. It was actually gcc46.
I removed it and now everything compiles fine.
I still don't have the LAPACK (atlas) package installed though.
Problem is that I already have some libraries in /usr/local which are built
for 64 bit compiler and I don't feel like changing these. This would mean
reinstalling these which would take quite some time. So I wonder how I
could install LAPACK on my Macbook (Mac OS X version 10.6.8) such that I
can compile it with my gfortran? This question is not really related to
fink anymore though, so thank you all very much!
Kees
2012/5/29 Alexander Hansen <[email protected]>
> On 5/29/12 5:21 AM, Kees Weemstra wrote:
> > Hi all,
> >
> > I have a serious problem.
> > It all started after an attempt to install the atlas (LAPACK) package
> > with Fink.
> > This didn't work out for some reason, so I ran 'fink selfupdate' and
> > 'fink update all'.
> > However, for some reason, I'm unable to compile any fortran code.
> > Previously installed fortran code that was compiling perfectly, doesn't
> > compile anymore.
> > The linker (ld) gives the following warning(s):
> >
> > /ld: warning: in /usr/local/sac/lib/libsacio.a, file was built for
> > unsupported file format which is not the architecture being linked (i386)
> > ld: warning: in /usr/local/sac/lib/libsac.a, file was built for
> > unsupported file format which is not the architecture being linked (i386)
> > /...
> >
> > Subsequenly the main code doesn't recognize the routines called in the
> > main code:
> >
> > /Undefined symbols:
> > "_wsac1_", referenced from:
> > _MAIN__ in ccLd2K67.o
> > "_getnhv_", referenced from:
> > _MAIN__ in ccLd2K67.o
> > _MAIN__ in ccLd2K67.o
> > _MAIN__ in ccLd2K67.o
> > _MAIN__ in ccLd2K67.o
> > _MAIN__ in ccLd2K67.o
> > _MAIN__ in ccLd2K67.o
> > "_sfftw_plan_dft_c2r_1d_", referenced from:
> > _MAIN__ in ccLd2K67.o
> > "_sfftw_execute_", referenced from:
> > _MAIN__._omp_fn.5 in ccLd2K67.o
> > _MAIN__._omp_fn.2 in ccLd2K67.o
> > "_getkhv_", referenced from:
> > _MAIN__ in ccLd2K67.o
> > "_sfftw_plan_dft_r2c_1d_", referenced from:
> > _MAIN__ in ccLd2K67.o
> > "_getfhv_", referenced from:
> > _MAIN__ in ccLd2K67.o
> > _MAIN__ in ccLd2K67.o
> > "_rsac1_", referenced from:
> > _MAIN__ in ccLd2K67.o/
> > /ld: symbol(s) not found
> > collect2: ld returned 1 exit status
> > make: *** [BIN/Xcorr] Error 1/
> >
> >
> > Fyi: these libraries were perfectly linking before, so it is not due to
> > them!
> > The error must be related to some other configuration related issue I
> think.
> > I don't know how to deal with this problem. Some help would be
> appreciated.
> > My OS is: Mac OS version 10.6.8
> > 2.66 GHz Intel Core i7 (so 64 bit and not 32 bit as i386)
>
> The _capabilities_ of your machine are absolutely irrelevant here.
>
> >
> > fink version:
> > Package manager version: 0.32.6
> > Distribution version: selfupdate-rsync Mon May 28 10:47:13 2012, 10.6,
> i386
>
> You specifically chose to use a 32-bit Fink.
>
> > Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
> >
> > Some help would be highly appreciated!
> > Thanks in advance!
> >
> > Best regards,
> > Kees
> >
> >
> >
> > --
> >
> > __________________________________________________________________
> >
> > Cornelis Weemstra
> > PhD Student
> >
> > NO H 39.2
> > Institute of Geophysics
> > ETH Zurich
> > Sonneggstrasse 5
> > CH-8092 Zürich
> > Switzerland
> >
> > e-mail: [email protected] <mailto:[email protected]>
> > tel: 0041 44 6337161
> > cell: 0041 77 4046628
> > __________________________________________________________________
> >
> >
> >
>
> I expect that what happened is that you installed fink's gcc47 package
> in attempting to build atlas (we're working on a fix for newer machines,
> by the way) and your original "gfortran" executable is no longer the
> first one in the PATH. You can confirm this by running
>
> "type -a gfortran"
>
> You can use "fink remove gcc47" to remove it.
>
> --
> Alexander Hansen, Ph.D.
> Fink User Liaison
> http://finkakh.wordpress.com/2012/02/21/got-job/
>
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