On 10/29/12 2:47 AM, Sébastien Maret wrote:
>
> Le 25 oct. 2012 à 22:45, Alexander Hansen <[email protected]> a
> écrit :
>
>> On 10/25/12 11:16 AM, Sean Lake wrote:
>>> Hello all,
>>>
>>> I'm starting from a fresh install on OSX 10.8. I've installed XCode from
>>> the App store, it's command line tools, and the Java SDK. I'm attempting
>>> to install scipy-py26 and scipy-py27 (the build didn't reach that one).
>>>
>>> Could this be related to this error:
>>> dyld: DYLD_ environment variables being ignored because main executable
>>> (/usr/bin/sudo) is setuid or setgid
>>>
>>
>> Probably not.
>>
>>> Thanks in advance for any help.
>>>
>>> Sean Lake
>>>
>>> Debugging info follows:
>>>
>>> Package manager version: 0.34.4
>>> Distribution version: selfupdate-rsync Thu Oct 25 01:08:57 2012, 10.8,
>>> x86_64
>>> Trees: local/main stable/main
>>> Xcode.app: 4.5.1
>>> Xcode command-line tools: 4.5.0.0.1.1249367152
>>> Max. Fink build jobs: 2
>>>
>>> gcc -L/sw/lib -bundle -L/sw/lib/python2.6/config -lpython2.6 -I/sw/include
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/splinemodule.o
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/S_bspline_util.o
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/D_bspline_util.o
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/C_bspline_util.o
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/Z_bspline_util.o
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/bspline_util.o
>>> -Lbuild/temp.macosx-10.8-x86_64-2.6 -o
>>> build/lib.macosx-10.8-x86_64-2.6/scipy/signal/spline.so
>>> Undefined symbols for architecture x86_64:
>>> "___ieee_divdc3", referenced from:
>>> _C_IIR_forback1 in C_bspline_util.o
>>> _Z_IIR_forback1 in Z_bspline_util.o
>>> ld: symbol(s) not found for architecture x86_64
>>> clang: error: linker command failed with exit code 1 (use -v to see
>>> invocation)
>>> Undefined symbols for architecture x86_64:
>>> "___ieee_divdc3", referenced from:
>>> _C_IIR_forback1 in C_bspline_util.o
>>> _Z_IIR_forback1 in Z_bspline_util.o
>>> ld: symbol(s) not found for architecture x86_64
>>> clang: error: linker command failed with exit code 1 (use -v to see
>>> invocation)
>>> error: Command "gcc -L/sw/lib -bundle -L/sw/lib/python2.6/config
>>> -lpython2.6 -I/sw/include
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/splinemodule.o
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/S_bspline_util.o
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/D_bspline_util.o
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/C_bspline_util.o
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/Z_bspline_util.o
>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/bspline_util.o
>>> -Lbuild/temp.macosx-10.8-x86_64-2.6 -o
>>> build/lib.macosx-10.8-x86_64-2.6/scipy/signal/spline.so" failed with exit
>>> status 1
>>> ### execution of /tmp/fink.QQTMQ failed, exit code 1
>>> ### execution of /tmp/fink.ouvfS failed, exit code 1
>>
>> I'm seeing the same thing. I don't see the path to the gcc47-shlibs
>> libraries in the linker line (-L/sw/lib/gcc4.7/lib), and that symbol
>> should be defined in /sw/lib/gcc4.7/lib/libgcc_s.1.dylib
>
>
> I can't reproduce the error (I am also on 10.8). Do you still get if you drop
> the "unset LDFLAGS" on line 33 of scipy-py.info ?
>
> Sébastien
>
I get a failure later in the build:
/sw/bin/gfortran -Wall -L/sw/lib
build/temp.macosx-10.7-x86_64-2.7/build/src.macosx-10.7-x86_64-2.7/scipy/fftpack/_fftpackmodule.o
build/temp.macosx-10.7-x86_64-2.7/scipy/fftpack/src/zfft.o
build/temp.macosx-10.7-x86_64-2.7/scipy/fftpack/src/drfft.o
build/temp.macosx-10.7-x86_64-2.7/scipy/fftpack/src/zrfft.o
build/temp.macosx-10.7-x86_64-2.7/scipy/fftpack/src/zfftnd.o
build/temp.macosx-10.7-x86_64-2.7/build/src.macosx-10.7-x86_64-2.7/scipy/fftpack/src/dct.o
build/temp.macosx-10.7-x86_64-2.7/build/src.macosx-10.7-x86_64-2.7/fortranobject.o
-L/sw/lib/gcc4.7/lib/gcc/x86_64-apple-darwin12.2.0/4.7.2
-Lbuild/temp.macosx-10.7-x86_64-2.7 -ldfftpack -lfftpack -lgfortran -o
build/lib.macosx-10.7-x86_64-2.7/scipy/fftpack/_fftpack.so
Undefined symbols for architecture x86_64:
"_PyArg_ParseTupleAndKeywords", referenced from:
_f2py_rout__fftpack_destroy_dct1_cache in _fftpackmodule.o
...
--
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/
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