On Oct 29, 2012, at 7:34, Alexander Hansen wrote: > On 10/29/12 7:12 AM, Sébastien Maret wrote: >> >> Le 29 oct. 2012 à 14:56, Alexander Hansen <[email protected]> a >> écrit : >> >>> On 10/29/12 2:47 AM, Sébastien Maret wrote: >>>> >>>> Le 25 oct. 2012 à 22:45, Alexander Hansen <[email protected]> a >>>> écrit : >>>> >>>>> On 10/25/12 11:16 AM, Sean Lake wrote: >>>>>> Hello all, >>>>>> >>>>>> I'm starting from a fresh install on OSX 10.8. I've installed XCode from >>>>>> the App store, it's command line tools, and the Java SDK. I'm >>>>>> attempting to install scipy-py26 and scipy-py27 (the build didn't reach >>>>>> that one). >>>>>> >>>>>> Could this be related to this error: >>>>>> dyld: DYLD_ environment variables being ignored because main executable >>>>>> (/usr/bin/sudo) is setuid or setgid >>>>>> >>>>> >>>>> Probably not. >>>>> >>>>>> Thanks in advance for any help. >>>>>> >>>>>> Sean Lake >>>>>> >>>>>> Debugging info follows: >>>>>> >>>>>> Package manager version: 0.34.4 >>>>>> Distribution version: selfupdate-rsync Thu Oct 25 01:08:57 2012, 10.8, >>>>>> x86_64 >>>>>> Trees: local/main stable/main >>>>>> Xcode.app: 4.5.1 >>>>>> Xcode command-line tools: 4.5.0.0.1.1249367152 >>>>>> Max. Fink build jobs: 2 >>>>>> >>>>>> gcc -L/sw/lib -bundle -L/sw/lib/python2.6/config -lpython2.6 >>>>>> -I/sw/include >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/splinemodule.o >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/S_bspline_util.o >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/D_bspline_util.o >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/C_bspline_util.o >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/Z_bspline_util.o >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/bspline_util.o >>>>>> -Lbuild/temp.macosx-10.8-x86_64-2.6 -o >>>>>> build/lib.macosx-10.8-x86_64-2.6/scipy/signal/spline.so >>>>>> Undefined symbols for architecture x86_64: >>>>>> "___ieee_divdc3", referenced from: >>>>>> _C_IIR_forback1 in C_bspline_util.o >>>>>> _Z_IIR_forback1 in Z_bspline_util.o >>>>>> ld: symbol(s) not found for architecture x86_64 >>>>>> clang: error: linker command failed with exit code 1 (use -v to see >>>>>> invocation) >>>>>> Undefined symbols for architecture x86_64: >>>>>> "___ieee_divdc3", referenced from: >>>>>> _C_IIR_forback1 in C_bspline_util.o >>>>>> _Z_IIR_forback1 in Z_bspline_util.o >>>>>> ld: symbol(s) not found for architecture x86_64 >>>>>> clang: error: linker command failed with exit code 1 (use -v to see >>>>>> invocation) >>>>>> error: Command "gcc -L/sw/lib -bundle -L/sw/lib/python2.6/config >>>>>> -lpython2.6 -I/sw/include >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/splinemodule.o >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/S_bspline_util.o >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/D_bspline_util.o >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/C_bspline_util.o >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/Z_bspline_util.o >>>>>> build/temp.macosx-10.8-x86_64-2.6/scipy/signal/bspline_util.o >>>>>> -Lbuild/temp.macosx-10.8-x86_64-2.6 -o >>>>>> build/lib.macosx-10.8-x86_64-2.6/scipy/signal/spline.so" failed with >>>>>> exit status 1 >>>>>> ### execution of /tmp/fink.QQTMQ failed, exit code 1 >>>>>> ### execution of /tmp/fink.ouvfS failed, exit code 1 >>>>> >>>>> I'm seeing the same thing. I don't see the path to the gcc47-shlibs >>>>> libraries in the linker line (-L/sw/lib/gcc4.7/lib), and that symbol >>>>> should be defined in /sw/lib/gcc4.7/lib/libgcc_s.1.dylib >>>> >>>> >>>> I can't reproduce the error (I am also on 10.8). Do you still get if you >>>> drop the "unset LDFLAGS" on line 33 of scipy-py.info ? >>>> >>>> Sébastien >>>> >>> >>> I get a failure later in the build: >>> >>> /sw/bin/gfortran -Wall -L/sw/lib >>> build/temp.macosx-10.7-x86_64-2.7/build/src.macosx-10.7-x86_64-2.7/scipy/fftpack/_fftpackmodule.o >>> build/temp.macosx-10.7-x86_64-2.7/scipy/fftpack/src/zfft.o >>> build/temp.macosx-10.7-x86_64-2.7/scipy/fftpack/src/drfft.o >>> build/temp.macosx-10.7-x86_64-2.7/scipy/fftpack/src/zrfft.o >>> build/temp.macosx-10.7-x86_64-2.7/scipy/fftpack/src/zfftnd.o >>> build/temp.macosx-10.7-x86_64-2.7/build/src.macosx-10.7-x86_64-2.7/scipy/fftpack/src/dct.o >>> build/temp.macosx-10.7-x86_64-2.7/build/src.macosx-10.7-x86_64-2.7/fortranobject.o >>> -L/sw/lib/gcc4.7/lib/gcc/x86_64-apple-darwin12.2.0/4.7.2 >>> -Lbuild/temp.macosx-10.7-x86_64-2.7 -ldfftpack -lfftpack -lgfortran -o >>> build/lib.macosx-10.7-x86_64-2.7/scipy/fftpack/_fftpack.so >>> Undefined symbols for architecture x86_64: >>> "_PyArg_ParseTupleAndKeywords", referenced from: >>> _f2py_rout__fftpack_destroy_dct1_cache in _fftpackmodule.o >> >> Can you try to replace the "unset LDFLAGS" by "export >> LDFLAGS=-L%p/lib/gcc4.7/lib" then ? >> >> Sébastien >> > > That didn't change the result. > > -- > Alexander Hansen, Ph.D.
For what it's worth, I thought I should add that scipy-py27 installs just fine. Thanks, Sean ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
