On 04/07/2013 20:39, Alexander Hansen wrote:
> On 7/4/13 11:31 AM, Luigi Ernesto Zanotti wrote:
>> On 04/07/2013 20:26, Alexander Hansen wrote:
>>> On 7/4/13 8:48 AM, Luigi Ernesto Zanotti wrote:
>>>> On 04/07/2013 17:28, Alexander Hansen wrote:
>>>>> On 7/4/13 8:23 AM, Luigi Ernesto Zanotti wrote:
>>>>>> On 04/07/2013 16:39, Alexander Hansen wrote:
>>>>>>> On 7/4/13 7:14 AM, Luigi Ernesto Zanotti wrote:
>>>>>>>> On 04/07/2013 15:34, Alexander Hansen wrote:
>>>>>>>>> On 7/4/13 3:33 AM, Luigi Ernesto Zanotti wrote:
>>>>>>>>>>
>>>>>>>>>> Owing to some troubles on my iMac, last week I decided to
>>>>>>>>>> reinstall
>>>>>>>>>> fink
>>>>>>>>>> from scratch (fink-0-34-7).
>>>>>>>>>> While installing root5 I got the following error:
>>>>>>>>>> *
>>>>>>>>>> /bin/mv /sw/src/fink.build/root-gts75-0.7.6-2/sw/bin/happrox
>>>>>>>>>> /sw/src/fink.build/root-gts-bin-0.7.6-2/sw/bin/
>>>>>>>>>> mv: rename 
>>>>>>>>>> /sw/src/fink.build/root-gts75-0.7.6-2/sw/bin/happrox to
>>>>>>>>>> /sw/src/fink.build/root-gts-bin-0.7.6-2/sw/bin/happrox: No such
>>>>>>>>>> file or
>>>>>>>>>> directory
>>>>>>>>>> ### execution of /bin/mv failed, exit code 1
>>>>>>>>>> ### execution of /tmp/fink.fnOI2 failed, exit code 1
>>>>>>>>>> Removing runtime build-lock...
>>>>>>>>>> Removing build-lock package...
>>>>>>>>>> /sw/bin/dpkg-lockwait -r fink-buildlock-gts75-0.7.6-2
>>>>>>>>>> (Reading database ... 62604 files and directories currently
>>>>>>>>>> installed.)
>>>>>>>>>> Removing fink-buildlock-gts75-0.7.6-2 ...
>>>>>>>>>> Failed: phase installing: gts-bin-0.7.6-2 failed
>>>>>>>>>> *
>>>>>>>>>> So I tried to install "gts75" separately, but the same error
>>>>>>>>>> occurs.
>>>>>>>>>> On the other hand, installation on an old Mac-i386 was
>>>>>>>>>> successful; in
>>>>>>>>>> both cases the package is "/sw/src/gts-0.7.6.tar.gz".
>>>>>>>>>> Looking at installation log files it seems tha the routine
>>>>>>>>>> "happrox",
>>>>>>>>>> located in "/sw/src/gts-0.7.6.tar.gz", is never compiled on the
>>>>>>>>>> iMac.
>>>>>>>>>> Do you have suggestions to solve the problem?
>>>>>>>>>> Thanks in advance and best regards,
>>>>>>>>>>
>>>>>>>>>>                               Luigi Zanotti
>>>>>>>>>>
>>>>>>>>>> Info:
>>>>>>>>>> iMac Intel core 2 Duo, OS X 10.8.4, Xcode 4.6.3 with tools
>>>>>>>>>> Distribution version: selfupdate-rsync Wed Jul 3 12:17:35 2013,
>>>>>>>>>> 10.8,
>>>>>>>>>> x86_64
>>>>>>>>>> Trees: local/main stable/main
>>>>>>>>>> Xcode.app: 4.6.3
>>>>>>>>>> Xcode command-line tools: 4.6.0.0.1.1365549073
>>>>>>>>>> Max. Fink build jobs:  1
>>>>>>>>>>
>>>>>>>>>> Macbook i386, OS X 10.6.8, Xcode 3.2.6
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>> I changed the subject because gts75 is what failed to build.
>>>>>>>>>
>>>>>>>>> As you thought, happrox never got compiled. That's not enough
>>>>>>>>> information to come up with a fix, though, since we really 
>>>>>>>>> need to
>>>>>>>>> see
>>>>>>>>> _why_ this happened.
>>>>>>>>>
>>>>>>>>> I don't reproduce this error on 10.8 with Xcode 4.6.3. Let's
>>>>>>>>> start by
>>>>>>>>> checking your output from an attempt to build gts75 and see if 
>>>>>>>>> you
>>>>>>>>> can
>>>>>>>>> find another error earlier in the build.
>>>>>>>>>
>>>>>>>> By inspection of the redirected output of <fink install gts75> to
>>>>>>>> file,
>>>>>>>> with grep I could not find any mention of <happrox> except in 
>>>>>>>> the mv
>>>>>>>> command that fails. The output is very big to send you a copy, so
>>>>>>>> if you
>>>>>>>> have to suggest any further inquiry you are welcome.
>>>>>>>> Yours,
>>>>>>>> Luigi Zanotti
>>>>>>>>
>>>>>>>> -- 
>>>>>>>>
>>>>>>>> Prof. Luigi E. Zanotti
>>>>>>>> Physics Department "G. Occhialini"
>>>>>>>> University of Milano-Bicocca & INFN
>>>>>>>> Piazza della Scienza 3 - 20126 Milano - Italy
>>>>>>>>
>>>>>>>> Tel.: +39 02 6448 24613
>>>>>>>> Cell.: +39 349 0997239
>>>>>>>> E-mail:[email protected]
>>>>>>>>
>>>>>>>
>>>>>>> I found the following item in your build configuration:
>>>>>>>
>>>>>>> configure: WARNING: libnetpbm not found. Some programs will not be
>>>>>>> available.
>>>>>>>
>>>>>>> The gts75 package carries an explicit dependency on
>>>>>>> libnetpbm10-shlibs, and so it _should_ find libnetbpm.  We can get
>>>>>>> more information from
>>>>>>> /sw/src/fink.build/gts75-0.7.6-2/gts-0.7.6/config.log . Check in 
>>>>>>> that
>>>>>>> file at about line 814 where netpbm is being tested. At that 
>>>>>>> point I
>>>>>>> have, for comparison:
>>>>>>>
>>>>>>> configure:20836: checking for pgm_init in -lnetpbm
>>>>>>> configure:20866: gcc -o conftest -g -O2 -Wall
>>>>>>> -Werror-implicit-function-declaration -Wstrict-prototypes
>>>>>>> -Wmissing-prototypes -Wmissing-declarations -I/sw/include -L/sw/lib
>>>>>>> conftest.c -lnetpbm   >&5
>>>>>>> configure:20872: $? = 0
>>>>>>> configure:20875: test -z              || test ! -s conftest.err
>>>>>>> configure:20878: $? = 0
>>>>>>> configure:20881: test -s conftest
>>>>>>> configure:20884: $? = 0
>>>>>>> configure:20897: result: yes
>>>>>>>
>>>>>>> Hopefully there will be an error message here which will help us
>>>>>>> figure out what exactly is going on.
>>>>>> I find at line 812 and after:
>>>>>>
>>>>>> configure:20825: result: yes
>>>>>> configure:20836: checking for pgm_init in -lnetpbm
>>>>>> configure:20866: gcc -o conftest -g -O2 -Wall
>>>>>> -Werror-implicit-function-declaration -Wstrict-prototypes
>>>>>> -Wmissing-prototypes -Wmissing-declarations -I/sw/include -L/sw/lib
>>>>>> conftest.c -lnetpbm   >&5
>>>>>> ld: library not found for -lnetpbm
>>>>>> clang: error: linker command failed with exit code 1 (use -v to see
>>>>>> invocation)
>>>>>> configure:20872: $? = 1
>>>>>> configure: failed program was:
>>>>>> | /* confdefs.h.  */
>>>>>> |
>>>>>>
>>>>>> so here something is wrong! Now a list from fink:
>>>>>>
>>>>>> iMac-home-17:20:~> fink list netpbm
>>>>>> Information about 7608 packages read in 3 seconds.
>>>>>>       netpbm               9.25-16         Graphics manipulation
>>>>>> programs and libraries
>>>>>> (i)  netpbm-bin           10.47.44-2      Graphics manipulation
>>>>>> programs
>>>>>> and libraries
>>>>>>   i   netpbm-shlibs        9.25-16         Graphics manipulation
>>>>>> programs and libraries
>>>>>>   i   netpbm10             10.47.44-2      Graphics manipulation
>>>>>> programs and libraries
>>>>>>   i   netpbm10-shlibs      10.47.44-2      Graphics manipulation
>>>>>> programs and libraries
>>>>>>
>>>>>> What to do?
>>>>>> Luigi Zanotti
>>>>>>
>>>>>> -- 
>>>>>>
>>>>>> Prof. Luigi E. Zanotti
>>>>>> Physics Department "G. Occhialini"
>>>>>> University of Milano-Bicocca & INFN
>>>>>> Piazza della Scienza 3 - 20126 Milano - Italy
>>>>>>
>>>>>> Tel.: +39 02 6448 24613
>>>>>> Cell.: +39 349 0997239
>>>>>> E-mail:[email protected]
>>>>>>
>>>>>>
>>>>>
>>>>> First, see if 'fink update netpbm-bin' resolves the issue--when the
>>>>> different packages in a family have different versions this can cause
>>>>> problems.
>>>>>
>>>> After -fink update netpbm-bin -  I have:
>>>>
>>>> iMac-home-17:39:~> fink list netpbm
>>>> Information about 7608 packages read in 1 seconds.
>>>>       netpbm               9.25-16         Graphics manipulation
>>>> programs and libraries
>>>>   i   netpbm-bin           10.47.44-2      Graphics manipulation
>>>> programs and libraries
>>>>   i   netpbm-shlibs        9.25-16         Graphics manipulation
>>>> programs and libraries
>>>>   i   netpbm10             10.47.44-2      Graphics manipulation
>>>> programs and libraries
>>>>   i   netpbm10-shlibs      10.47.44-2      Graphics manipulation
>>>> programs and libraries
>>>>
>>>> but gts75 fails as before (same error in config.log).
>>>>
>>>>                                      Luigi Zanotti
>>>>
>>>> -- 
>>>>
>>>> Prof. Luigi E. Zanotti
>>>> Physics Department "G. Occhialini"
>>>> University of Milano-Bicocca & INFN
>>>> Piazza della Scienza 3 - 20126 Milano - Italy
>>>>
>>>> Tel.: +39 02 6448 24613
>>>> Cell.: +39 349 0997239
>>>> E-mail:[email protected]
>>>>
>>>
>>> Ok, I thought we should start with the simplest option first.
>>>
>>> Let's check for the presence of the libraries.  What do you get from:
>>>
>>> ls -l /sw/lib/libnetpbm*
>>>
>> Here the answer:
>>
>> iMac-home-20:28:~> ls -l /sw/lib/libnetpbm*
>> -rwxr-xr-x  1 root  admin  200028 Jun 30 11:17
>> /sw/lib/libnetpbm.10.47.dylib*
>> lrwxr-xr-x  1 root  admin      21 Jun 30 11:17
>> /sw/lib/libnetpbm.10.dylib@ -> libnetpbm.10.47.dylib
>>
>> -- 
>>
>> Prof. Luigi E. Zanotti
>> Physics Department "G. Occhialini"
>> University of Milano-Bicocca & INFN
>> Piazza della Scienza 3 - 20126 Milano - Italy
>>
>> Tel.: +39 02 6448 24613
>> Cell.: +39 349 0997239
>> E-mail:[email protected]
>>
>
> Ok.  For some reason you don't have a /sw/lib/libnetpbm.dylib -> 
> /sw/lib/libnetpbm.10.47.dylib symlink, so the problem is literally 
> what the report in config.log indicates.
>
> Try "fink rebuild netpbm10" first, and if that doesn't generate the 
> symlink, then go ahead and generate it manually, e.g.
>
> cd /sw/lib
> sudo ln -s /sw/lib/libnetpbm.10.47.dylib /sw/lib/libnetpbm.dylib
>
Very good! By creating the missing symlink gts75 was installed. As soon 
as possible I'll try with root5 - it should proceed smoothly now.
Thank you again. Yours,
Luigi Zanotti

-- 

Prof. Luigi E. Zanotti

Physics Department "G. Occhialini"
University of Milano-Bicocca & INFN

Piazza della Scienza
20126 Milano Italy

Tel.: +39 02 6448 2413
Cell.: +39 349 0997239
E-mail: [email protected]


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