The problem is obvious in the config.log...
configure:3734: /usr/bin/clang -o conftest -O3 -DNDEBUG
-I/sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4
-I/sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4
-I/sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4/opal/include
-I/sw/include -Wl,-flat_namespace -L/sw/lib conftest.c -lhwloc
>&5
configure:3738: $? = 0
configure:3745: ./conftest
dyld: Library not loaded: /sw/lib/libxml2.2.dylib
Referenced from: /sw/lib/libhwloc.5.dylib
Reason: Incompatible library version: libhwloc.5.dylib requires
version 12.0.0 or later, but libxml2.2.dylib provides version 10.0.0
./configure: line 3747: 39330 Trace/BPT trap: 5 ./conftest$ac_cv_exeext
configure:3749: $? = 133
configure:3756: error: in
`/sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4/opal/mca/event/libevent2021/libevent':
configure:3758: error: cannot run C compiled programs.
If you meant to cross compile, use `--host'.
The installed /sw/lib/libhwloc.5.dylib on your machine is properly
linked to the current libxml2 (as is mine on 10.9)...
% otool -L /sw/lib/libhwloc.5.dylib
/sw/lib/libhwloc.5.dylib:
/sw/lib/libhwloc.5.dylib (compatibility version 12.0.0, current version 12.1.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
version 1197.1.1)
/sw/lib/libxml2.2.dylib (compatibility version 12.0.0, current version 12.1.0)
but it appears that you have an older copy of the
/sw/lib/libxml2.2.dylib installed. Do you see the following?
% otool -L /sw/lib/libxml2.2.dylib
/sw/lib/libxml2.2.dylib:
/sw/lib/libxml2.2.dylib (compatibility version 12.0.0, current version 12.1.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
version 1197.1.1)
/usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.5)
/sw/lib/liblzma.5.dylib (compatibility version 6.0.0, current version 6.5.0)
/sw/lib/libiconv.2.dylib (compatibility version 8.0.0, current version 8.1.0)
with the installed libxml2 having a compatibility version of 12.0.0?
If not try 'fink rebuild libxml2'.
Jack
On Thu, May 7, 2015 at 6:22 PM, Barnes, Peter D. <barne...@llnl.gov> wrote:
> Moving /usr/local and /opt/local didn't change anything.
>
> Requested config.log is attached.
>
> Thanks,
> Peter
>
> On May 7, 2015, at 1:46 PM, Jack Howarth <howarth.at.f...@gmail.com>
> wrote:
>> No problems building on 10.9 here. Please post the config.log from
>> /sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4/opal/mca/event/libevent2021/libevent
>> so we can see the actual error. Also try the usual checks of moving
>> aside /usr/local and /opt/local to make sure that doesn't solve your
>> build problem.
>>
>> On Thu, May 7, 2015 at 3:12 PM, Barnes, Peter D. <barne...@llnl.gov> wrote:
>>> Hello Folks,
>>>
>>> openmpi-1.8.43 build fails, during a configure step.
>>>
>>> This is after reducing build jobs to 1, rebooting, and fink self-update.
>>>
>>> Thanks for any hints,
>>> Peter
>>>
>>> Package manager version: 0.38.4
>>> Distribution version: selfupdate-rsync Thu May 7 11:09:59 2015, 10.9,
>>> x86_64
>>> Trees: local/main stable/main unstable/main
>>> Xcode.app: 6.1.1
>>> Xcode command-line tools: 6.2.0.0.1.1424975374
>>> Max. Fink build jobs: 1
>>>
>>> Hardware Overview:
>>> Model Name: MacBook Pro
>>> Model Identifier: MacBookPro5,4
>>> Processor Name: Intel Core 2 Duo
>>> Processor Speed: 2.53 GHz
>>> Number of Processors: 1
>>> Total Number of Cores: 2
>>> System Software Overview:
>>> System Version: OS X 10.9.5 (13F1077)
>>> Kernel Version: Darwin 13.4.0
>>>
>>> Failed build step:
>>>> --- MCA component event:libevent2021 (m4 configuration macro, priority 80)
>>>> checking for MCA component event:libevent2021 compile mode... static
>>>> checking libevent configuration args... --disable-dns --disable-http
>>>> --disable-rpc --disable-openssl --enable-thread-support --disable-evport
>>>> configure: OMPI configuring in opal/mca/event/libevent2021/libevent
>>>> configure: running /bin/sh './configure' --disable-dns --disable-http
>>>> --disable-rpc --disable-openssl --enable-thread-support --disable-evport
>>>> '--prefix=/sw' '--datadir=/sw/share/doc' '--sysconfdir=/sw/etc/openmpi'
>>>> '--sharedstatedir=/sw/var/openmpi/shared'
>>>> '--localstatedir=/sw/var/openmpi/local' '--libdir=/sw/lib/openmpi'
>>>> '--includedir=/sw/include' '--infodir=/sw/share/info'
>>>> '--mandir=/sw/share/man' '--enable-shared' '--enable-static' 'FCFLAGS=-O3'
>>>> '--with-devel-headers' 'FC=gfortran-fsf-5' '--with-hwloc=/sw'
>>>> 'CC=/usr/bin/clang' 'CXX=/usr/bin/clang++' --cache-file=/dev/null
>>>> --srcdir=. --disable-option-checking
>>>> checking for a BSD-compatible install... /usr/bin/install -c
>>>> checking whether build environment is sane... yes
>>>> checking for a thread-safe mkdir -p... ./install-sh -c -d
>>>> checking for gawk... no
>>>> checking for mawk... no
>>>> checking for nawk... no
>>>> checking for awk... awk
>>>> checking whether make sets $(MAKE)... yes
>>>> checking build system type... x86_64-apple-darwin13.4.0
>>>> checking host system type... x86_64-apple-darwin13.4.0
>>>> checking for gcc... /usr/bin/clang
>>>> checking whether the C compiler works... yes
>>>> checking for C compiler default output file name... a.out
>>>> checking for suffix of executables...
>>>> checking whether we are cross compiling... configure: error: in
>>>> `/sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4/opal/mca/event/libevent2021/libevent':
>>>> configure: error: cannot run C compiled programs.
>>>> If you meant to cross compile, use `--host'.
>>>> See `config.log' for more details
>>>> configure: /bin/sh './configure' *failed* for
>>>> opal/mca/event/libevent2021/libevent
>>>> configure: WARNING: Event library failed to configure
>>>> configure: error: Cannot continue
>>>> ### execution of /tmp/fink.Rtl0n failed, exit code 1
>>>> ### execution of /tmp/fink.D4lDv failed, exit code 1
>>>> Removing runtime build-lock...
>>>> Removing build-lock package...
>>>> /sw/bin/dpkg-lockwait -r fink-buildlock-openmpi-1.8.4-3
>>>> (Reading database ... 36096 files and directories currently installed.)
>>>> Removing fink-buildlock-openmpi-1.8.4-3 ...
>>>> Failed: phase compiling: openmpi-1.8.4-3 failed
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