Thanks! Updating libxml2 fixed the problem. Peter
On May 7, 2015, at 4:02 PM, Jack Howarth <howarth.at.f...@gmail.com> wrote: > The problem is obvious in the config.log... > > configure:3734: /usr/bin/clang -o conftest -O3 -DNDEBUG > -I/sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4 > -I/sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4 > -I/sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4/opal/include > -I/sw/include -Wl,-flat_namespace -L/sw/lib conftest.c -lhwloc >> &5 > configure:3738: $? = 0 > configure:3745: ./conftest > dyld: Library not loaded: /sw/lib/libxml2.2.dylib > Referenced from: /sw/lib/libhwloc.5.dylib > Reason: Incompatible library version: libhwloc.5.dylib requires > version 12.0.0 or later, but libxml2.2.dylib provides version 10.0.0 > ./configure: line 3747: 39330 Trace/BPT trap: 5 ./conftest$ac_cv_exeext > configure:3749: $? = 133 > configure:3756: error: in > `/sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4/opal/mca/event/libevent2021/libevent': > configure:3758: error: cannot run C compiled programs. > If you meant to cross compile, use `--host'. > > The installed /sw/lib/libhwloc.5.dylib on your machine is properly > linked to the current libxml2 (as is mine on 10.9)... > > % otool -L /sw/lib/libhwloc.5.dylib > /sw/lib/libhwloc.5.dylib: > /sw/lib/libhwloc.5.dylib (compatibility version 12.0.0, current version > 12.1.0) > /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current > version 1197.1.1) > /sw/lib/libxml2.2.dylib (compatibility version 12.0.0, current version 12.1.0) > > but it appears that you have an older copy of the > /sw/lib/libxml2.2.dylib installed. Do you see the following? > > % otool -L /sw/lib/libxml2.2.dylib > /sw/lib/libxml2.2.dylib: > /sw/lib/libxml2.2.dylib (compatibility version 12.0.0, current version 12.1.0) > /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current > version 1197.1.1) > /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.5) > /sw/lib/liblzma.5.dylib (compatibility version 6.0.0, current version 6.5.0) > /sw/lib/libiconv.2.dylib (compatibility version 8.0.0, current version 8.1.0) > > with the installed libxml2 having a compatibility version of 12.0.0? > If not try 'fink rebuild libxml2'. > Jack > > On Thu, May 7, 2015 at 6:22 PM, Barnes, Peter D. <barne...@llnl.gov> wrote: >> Moving /usr/local and /opt/local didn't change anything. >> >> Requested config.log is attached. >> >> Thanks, >> Peter >> >> On May 7, 2015, at 1:46 PM, Jack Howarth <howarth.at.f...@gmail.com> >> wrote: >>> No problems building on 10.9 here. Please post the config.log from >>> /sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4/opal/mca/event/libevent2021/libevent >>> so we can see the actual error. Also try the usual checks of moving >>> aside /usr/local and /opt/local to make sure that doesn't solve your >>> build problem. >>> >>> On Thu, May 7, 2015 at 3:12 PM, Barnes, Peter D. <barne...@llnl.gov> wrote: >>>> Hello Folks, >>>> >>>> openmpi-1.8.43 build fails, during a configure step. >>>> >>>> This is after reducing build jobs to 1, rebooting, and fink self-update. >>>> >>>> Thanks for any hints, >>>> Peter >>>> >>>> Package manager version: 0.38.4 >>>> Distribution version: selfupdate-rsync Thu May 7 11:09:59 2015, 10.9, >>>> x86_64 >>>> Trees: local/main stable/main unstable/main >>>> Xcode.app: 6.1.1 >>>> Xcode command-line tools: 6.2.0.0.1.1424975374 >>>> Max. Fink build jobs: 1 >>>> >>>> Hardware Overview: >>>> Model Name: MacBook Pro >>>> Model Identifier: MacBookPro5,4 >>>> Processor Name: Intel Core 2 Duo >>>> Processor Speed: 2.53 GHz >>>> Number of Processors: 1 >>>> Total Number of Cores: 2 >>>> System Software Overview: >>>> System Version: OS X 10.9.5 (13F1077) >>>> Kernel Version: Darwin 13.4.0 >>>> >>>> Failed build step: >>>>> --- MCA component event:libevent2021 (m4 configuration macro, priority 80) >>>>> checking for MCA component event:libevent2021 compile mode... static >>>>> checking libevent configuration args... --disable-dns --disable-http >>>>> --disable-rpc --disable-openssl --enable-thread-support --disable-evport >>>>> configure: OMPI configuring in opal/mca/event/libevent2021/libevent >>>>> configure: running /bin/sh './configure' --disable-dns --disable-http >>>>> --disable-rpc --disable-openssl --enable-thread-support --disable-evport >>>>> '--prefix=/sw' '--datadir=/sw/share/doc' '--sysconfdir=/sw/etc/openmpi' >>>>> '--sharedstatedir=/sw/var/openmpi/shared' >>>>> '--localstatedir=/sw/var/openmpi/local' '--libdir=/sw/lib/openmpi' >>>>> '--includedir=/sw/include' '--infodir=/sw/share/info' >>>>> '--mandir=/sw/share/man' '--enable-shared' '--enable-static' >>>>> 'FCFLAGS=-O3' '--with-devel-headers' 'FC=gfortran-fsf-5' >>>>> '--with-hwloc=/sw' 'CC=/usr/bin/clang' 'CXX=/usr/bin/clang++' >>>>> --cache-file=/dev/null --srcdir=. --disable-option-checking >>>>> checking for a BSD-compatible install... /usr/bin/install -c >>>>> checking whether build environment is sane... yes >>>>> checking for a thread-safe mkdir -p... ./install-sh -c -d >>>>> checking for gawk... no >>>>> checking for mawk... no >>>>> checking for nawk... no >>>>> checking for awk... awk >>>>> checking whether make sets $(MAKE)... yes >>>>> checking build system type... x86_64-apple-darwin13.4.0 >>>>> checking host system type... x86_64-apple-darwin13.4.0 >>>>> checking for gcc... /usr/bin/clang >>>>> checking whether the C compiler works... yes >>>>> checking for C compiler default output file name... a.out >>>>> checking for suffix of executables... >>>>> checking whether we are cross compiling... configure: error: in >>>>> `/sw/src/fink.build/openmpi-1.8.4-3/openmpi-1.8.4/opal/mca/event/libevent2021/libevent': >>>>> configure: error: cannot run C compiled programs. >>>>> If you meant to cross compile, use `--host'. >>>>> See `config.log' for more details >>>>> configure: /bin/sh './configure' *failed* for >>>>> opal/mca/event/libevent2021/libevent >>>>> configure: WARNING: Event library failed to configure >>>>> configure: error: Cannot continue >>>>> ### execution of /tmp/fink.Rtl0n failed, exit code 1 >>>>> ### execution of /tmp/fink.D4lDv failed, exit code 1 >>>>> Removing runtime build-lock... >>>>> Removing build-lock package... >>>>> /sw/bin/dpkg-lockwait -r fink-buildlock-openmpi-1.8.4-3 >>>>> (Reading database ... 36096 files and directories currently installed.) >>>>> Removing fink-buildlock-openmpi-1.8.4-3 ... >>>>> Failed: phase compiling: openmpi-1.8.4-3 failed ------------------------------------------------------------------------------ One dashboard for servers and applications across Physical-Virtual-Cloud Widest out-of-the-box monitoring support with 50+ applications Performance metrics, stats and reports that give you Actionable Insights Deep dive visibility with transaction tracing using APM Insight. http://ad.doubleclick.net/ddm/clk/290420510;117567292;y _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
