Thanks a lot, Plamen. That very document --the White Paper-- could be an excellent starting text for a next discussion session in the list, on biological information & computation, to be chaired by inbiosa parties. Does it look a good idea? best wishes

---Pedro

Dr. Plamen L. Simeonov escribió:
Thank you, Bruno, John, Walter, Pedro, Gordana & FIS,

I could not agree more with the said above. My only addendum to John’s argument to think about computation as "only one mode of information i.e. information AS cognitive process” is that computation should not be limited only to cognitive processes, but start earlier in biological development to and go all the way up to consciousness along the autopoietic tradition as shown in:

http://www.slideshare.net/PriMate_PaTagOn/francisco-varela-a-calculus-for-selfreference-1707403

Bruno’s approach is also very interesting.

We just finished our White Paper, the outcome of an almost one year joint effort within the INBIOSA project with contributions of Koichiro Matsuno, Stanly Salthe, Marcin Schroeder and other colleagues, and I wish to ask Pedro if it were appropriate to distribute this document within the FIS circle as a discussion base about information and computation in biological context.
Best wishes,

Plamen

___ ___ ___

Dr. Plamen L. Simeonov
landline:   +49.30.38.10.11.25
fax/ums:   +49.30.48.49.88.26.4
mobile:     +44.12.23.96.85.69
email:     [email protected] <mailto:[email protected]>
URL:      www.simeio.org <http://www.simeio.org>

On Sun, Dec 11, 2011 at 6:38 PM, Bruno Marchal <[email protected] <mailto:[email protected]>> wrote:

    Hi John, Hi Fis-people


    On 11 Dec 2011, at 13:49, [email protected]
    <mailto:[email protected]> wrote:

    Thanks Walter,

    A useful snapshot of PC (Philosophy of Computing). It reminds me
    that the origin of the word 'computing'   is com-putare = to
    consider together, suppose together, imagine together. This is
    surely what Steve Jobs was all about. To reduce computation to
    algorithmic calculation or even Turing machines is as restrictive
    as limiting information to data and documents, messages and
    codes. After thirty years of phronesis wrestling with data
    documents and computers it would be nice to know what computation
    and information mean.

    It might be restrictive at the epistemological level, but not
    necessarily at the ontological level. All mathematical notions,
    like infinities, sets, provability, definability, etc. can be
    diagonalized again. They cannot have a universal representation.
    But computability and computations are immune to diagonalization.
    This makes it the concept the most explanatively closed we have
    ever found. I think. This gives a conceptual deep argument in
    favor of Church thesis, and it leads also to the notion of
    universal machines.

    Those machines can not only compute the same class of all (partial
    or total) computable functions, but can all simulate each other,
    computing those functions in all possible different ways.
    Actually, an interesting and vast class of universal machines
    (those who knows, in some technical sense, that they are
    universal) can defeat any theory concerning their own behavior
    (they can practice diagonalization), making their epistemologies
    beyond any normative or effectively complete theory. It makes
    computationalism (the doctrine that there exists a level where we
    are Turing emulable) a vaccine against reductionist conception of
    machine (and man).

    I am Bruno Marchal, mathematician, and I met Pedro and Plamen in
    Paris some month ago. Although I am agnostic on the truth of the
    computationalist hypothesis in the cognitive science, I am
    interested to study the mind body problem in that frame. With the
    computationalist hypothesis, computer science and mathematical
    logic becomes handy tools for formulating deep questions.

    In fact I have a deductive argument that computationalism and weak
    materialism (there exist an ontologically primary physical
    universe) are incompatible. I have shown that computationalism
    reduces (in my french PhD thesis in computer science) the mind
    body problem into a body appearance (to universal numbers) problem
in number theory.
    Physics would not be the fundamental science, and we might have to
    backtrack to Plato, or even Pythagorus' conception of reality.
    Physical reality becomes somehow the border of a universal mind
    (the possible universal machine dreams, or the effective set of
    all computations seen from inside. The "seen from inside" can be
    defined from the modal logic of self-reference, which exploits
    that immunity for diagonalization, and the fact that machines can
be "aware" of that fact.
    The following two papers sum up the main results and questions
    needed to solve to proceed:

    http://iridia.ulb.ac.be/~marchal/publications/SANE2004MARCHALAbstract.html
    
<http://iridia.ulb.ac.be/%7Emarchal/publications/SANE2004MARCHALAbstract.html>

    http://iridia.ulb.ac.be/~marchal/publications/CiE2007/SIENA.pdf
    <http://iridia.ulb.ac.be/%7Emarchal/publications/CiE2007/SIENA.pdf>

    Unfortunately the longer version of those works are in french
    (they can be found from my URL below).

    This might perhaps put some light on the difficult question of
    what is information. Like infinite, and like almost all in-#
    notions, that notion might not have a definitive definition,
    especially /information/ which walked from syntactic definitions
    (Shannon) to semantical one (knowledge).



    Computation is only one mode of information i.e. information AS
    cognitive process. Perhaps the only way out of our definitional
    impasse is to adopt the third option of the Capurro trilemma -
    plurivocity. If we can stop thinking linearly and start to think
    like a Dharma Wheel with all the different emergent modes of
    information arranged as spokes (having their expert
    spokespersons) each having equal validity with ignorance at the
    fulcrum, then we can move towards a viable transdisciplinary
    model for info which has hitherto evaded us. Nonlinear thinking
    has been the great driver of the computing and Internet industries.


    I agree.

    Best,

    Bruno

    http://iridia.ulb.ac.be/~marchal/
    <http://iridia.ulb.ac.be/%7Emarchal/>



    On Fri Dec 9 2:55 , [email protected]
    <mailto:[email protected]> sent:

        Dear all,

        It is possible find some useful ideas to build
        multi-inter-trans disciplinary approaches in last “closing
        statement” of Ubiquity Symposium: What is Computation?

        What Have We Said About Computation?
        
<http://portal.acm.org/ft_gateway.cfm?id=1967046&type=pdf&ip=190.235.16.240>

        If you are interested in all papers of this ACM Ubiquity
        Symposium:

        http://ubiquity.acm.org/symposia.cfm

        Sincerely,

        Walter Riofrio

        ------------------------------------------------------------

Walter Riofrio Researcher; Complex Thought Institute Edgar Morin – University Ricardo Palma, Lima-Peru Chercheur Associé; Institut des Systèmes Complexes – Paris
        Île-de-France (ISC-PIF)

Theoretical and Evolutionary Biology Email: [email protected] <mailto:[email protected]> -----------------------------------------------------------




        On jue 08/12/11 06:25 , John Collier [email protected]
        <mailto:[email protected]> sent:

            Good to see that fis perspectives are used in teaching. I
            use information ideas fundamentally in our second year
            Cognitive Science course, and also in some postgrad
            courses I teach.

            John


            At 03:03 PM 2011/12/07, Pedro C. Marijuan wrote:
            Thanks a lot, Gordana. It is a very good idea.
            Unfortunately I could not participate in the opening of
            the session,  well, at least I can say now that I had
            the experience of teaching for Engineering graduate
            students two neatly informational ("FIS") disciplines.
            One of them, Bioinformation: informational analysis of
            living systems; and the other Science, Technology and
            Society: an introduction to the informational history of
            societies.  Both of them in Spanish. They were very
            successful, particularly the latter. The FIS perspective
            is ideal not only for breaking down on "impossible
            topics" (our familiar demons) but also for promoting a
            new, highly original way of analysis --of knolweldge
            recombination processes-- on topics of our time and of
            the most contentious past.

            missing a lot the direct involvement in the discussions!

            yours,

            ---Pedro

            Gordana Dodig-Crnkovic escribió:
            Hi All,
One way of looking at the question of curriculum would
            be from the point of view of what already exists
            of education in the Foundations of Information.
Are there any courses which might be a part of such a
            curriculum?
To start with I can tell about the course I have, which
            does not cover much of Science of information, but
            there are several connections.
            As I work at the computer science department, my
            perspective is computational.
            For me computing is information processing and
            information is that which is processed, and that which
            is a result of processing.
            Processing may be done by a machine or by an organism
            or anything else – the whole of nature computes
            (processes information) in different ways.

            As info-computationalist, I believe that information is
            unthinkable without computation.
            So the course is on Computing and Philosophy but
            addresses Philosophy of Information and Science of
            Information as well and topics on evolution of life,
            intelligence (natural and artificial), consciousness,
etc. <http://www.idt.mdh.se/kurser/comphil>http://www.idt.mdh.se/kurser/comphil I believe it would be good to have a course on the
            foundations of information science for people in the
            computing.
            Information and computation are completely entangled!
            And this gives also an opportunity to introduce other
            fields into computing, to contribute to building
            bridges and
            facilitating inter-disciplinary/ cross-disciplinary/
            trans-disciplinary  learning.
This is not as ambitious as the original question, but
            can help understanding where we are now and where we
            want to be.
Best wishes,
            Gordana
            http://www.mrtc.mdh.se/~gdc/
            <http://www.mrtc.mdh.se/%7Egdc/>
From: [email protected] [
            mailto:[email protected]] On Behalf Of
            Stanley N Salthe
            Sent: den 5 december 2011 20:53
            To: fis
            Subject: Re: [Fis] Discussion of Information Science
            Education
And it could feature in 'Science for Non-Majors'
            courses as well.
STAN
            On Mon, Dec 5, 2011 at 12:44 PM, Guy A Hoelzer
            <[email protected]> wrote:
            Hi All,

            I agree with those who are suggesting that Information
            Science makes sense
            as a widely useful way to think about different
            scientific disciplines
            even if we don't have a strong consensus on how to
            define 'information'.
            I think there is enough coherence among views of
            'information' to underpin
            the unity and universality of the approach.  Perhaps
            Information Science
            is less a discipline of its own and more of a common
            approach to
understanding that can be applied across disciplines. While I can imagine
            good courses focusing on Information Science, it might
            be most productive
            to include a common framework for information-based
            models/viewpoints
            across the curriculum.

            Guy Hoelzer


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            Grupo de Bioinformación / Bioinformation Group Instituto
            Aragonés de Ciencias de la Salud Avda. Gómez Laguna, 25,
            Pl. 11ª

            50009 Zaragoza, Spain
            Telf: 34 976 71 3526 (& 6818) Fax: 34 976 71 5554
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Collier [email protected] <mailto:[email protected]>
            Philosophy and Ethics, University of KwaZulu-Natal,
            Durban 4041 South Africa
            T: +27 (31) 260 3248 / 260 2292       F: +27 (31) 260
            3031 <tel:%2B27%20%2831%29%20260%203031>

            
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--
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landline:   +49.30.38.10.11.25
fax/ums:   +49.30.48.49.88.26.4
mobile:     +44.12.23.96.85.69
email:     [email protected] <mailto:[email protected]>
URL:      www.simeio.org <http://www.simeio.org>
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Grupo de Bioinformación / Bioinformation Group
Instituto Aragonés de Ciencias de la Salud
Avda. Gómez Laguna, 25, Pl. 11ª
50009 Zaragoza, Spain
Telf: 34 976 71 3526 (& 6818) Fax: 34 976 71 5554
[email protected]
http://sites.google.com/site/pedrocmarijuan/
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