Dear Howard:
I am afraid one of your examples is not really accurate historically:
"the most amazing metaphor of relationality available to us is not math, it's not mechanism, and it's not reduction to "elements," it's language. by using the metaphor of a form of language called "code," watson and crick were able to understand what a strand of dna does and how. without language as metaphor, we'd still be in the dark about the genome." The idea how to pack huge amount of information in something as small as chromosome came not from language, but from Schroedinger's concept of aperiodic crystal in his book "What is Life?". Crick switched from his candidacy in physics to biology after reading this book. He knew very well what he was looking for together with Watson. And crystals, periodic or not, do not have much common with language.
Regards,
Marcin

On 9/29/2015 2:39 PM, howlbl...@aol.com wrote:
re: it is likely to be problematic to use language as the paradigm model for all communication--Terrence Deacon Terry makes interesting points, but I think on this one, he may be wrong. Guenther Witzany is on to something. our previous approaches to information have been what Barbara Ehrenreich, in her introduction to the upcoming paperback of my book The God Problem: How a Godless Cosmos Creates, calls "a kind of unacknowledged necrophilia." we've been using dead things to understand living things. aristotle put us on that path when he told us that if we could break things down to their "elements" and understand what he called the "laws" of those elements, we'd understand everything. Newton took us farther down that path when he said we could understand everything using the metaphor of the "contrivance," the machine--the metaphor of "mechanics" and of "mechanism." Aristotle and Newton were wrong. Their ideas have had centuries to pan out, and they've led to astonishing insights, but they've left us blind to the relational aspect of things. utterly blind. the most amazing metaphor of relationality available to us is not math, it's not mechanism, and it's not reduction to "elements," it's language. by using the metaphor of a form of language called "code," watson and crick were able to understand what a strand of dna does and how. without language as metaphor, we'd still be in the dark about the genome. i'm convinced that by learning the relational secrets of the body of work of a Shakespeare or a Goethe we could crack some of the secrets we've been utterly unable to comprehend, from what makes the social clots we call a galaxy's spiral arms (a phenomenon that astronomer Greg Matloff, a Fellow of the British interplanetary Society, says defies the laws of Newtonian and Einsteinian physics) to what makes the difference between life and death. in other words, it's time we confess in science just how little we know about language, that we explore language's mysteries, and that we use our discoveries as a crowbar to pry open the secrets of this highly contextual, deeply relational, profoundly communicational cosmos.
with thanks for tolerating my opinions.
howard
____________
Howard Bloom
Author of: /The Lucifer Principle: A Scientific Expedition Into the Forces of History/ ("mesmerizing"-/The Washington Post/), /Global Brain: The Evolution of Mass Mind From The Big Bang to the 21st Century/ ("reassuring and sobering"-/The New Yorker)/, /The Genius of the Beast: A Radical Re-Vision of Capitalism/ ("A tremendously enjoyable book." James Fallows, National Correspondent, /The Atlantic/), /The God Problem: How A Godless Cosmos Creates/ ("Bloom's argument will rock your world." Barbara Ehrenreich),
/How I Accidentally Started the Sixties/ ("Wow! Whew! Wild!
Wonderful!" Timothy Leary), and
/The Mohammed Code/ ("A terrifying book…the best book I've read on Islam." David Swindle,/PJ Media/).
www.howardbloom.net
Former Core Faculty Member, The Graduate Institute; Former Visiting Scholar-Graduate Psychology Department, New York University. Founder: International Paleopsychology Project; Founder, Space Development Steering Committee; Founder: The Group Selection Squad; Founding Board Member: Epic of Evolution Society; Founding Board Member, The Darwin Project; Founder: The Big Bang Tango Media Lab; member: New York Academy of Sciences, American Association for the Advancement of Science, American Psychological Society, Academy of Political Science, Human Behavior and Evolution Society, International Society for Human Ethology, Scientific Advisory Board Member, Lifeboat Foundation; Editorial Board Member, Journal of Space Philosophy; Board member and member of Board of Governors, National Space Society. In a message dated 9/28/2015 11:47:26 A.M. Eastern Daylight Time, pcmarijuan.i...@aragon.es writes:

    From Terry...

    -------- Original Message --------
    Subject:    Re: [Fis] Information is a linguistic description of
    structures
    Date:       Sun, 27 Sep 2015 22:13:14 -0700
    From:       Terrence W. Deacon <dea...@berkeley.edu>
    To:         Pedro C. Marijuan <pcmarijuan.i...@aragon.es>
    CC:         Günther Witzany <witz...@sbg.at>, <fa...@howardbloom.net>,
    fis <fis@listas.unizar.es>, Emanuel Diamant <emanl....@gmail.com>
    References:         <000201d0f68c$77d02b50$677081f0$@gmail.com>
    <0d34f6ef-19e6-4c9c-a9d3-aba4f5f2e...@sbg.at>
    <56053208.2000...@aragon.es>



    As exemplified in Guenther's auxin example, and Pedro's worries
    about the procrustean use of language metaphors in the discussion
    of inter- and intra-cellular communication, it is likely to be
    problematic to use language as the paradigm model for all
    communication, much less as the foundation upon which to build a
    general theory of information. From an evolutionary point of view,
    language is a highly derived human idiosyncratic form of
    communication that evolved only very recently in vertebrate
    phylogeny, in only one species, and is supported by a vast
    semiotic cognitive and social infrastructure. Communication in a
    more general sense is vastly older and far more generic. For this
    reason, it is wise to avoid talking in terms of the semantics of a
    cough, the meaning of a piece of music, or the syntax of a skunk's
    odor. The use of Carnap's approach to language semantics and
    various other uses of linguistic categories in information
    theoretic analyses needs to be understood as a special case, not
    the generic form. I would recommend that presentations and
    comments to them be framed with appropriate caveats, indicating
    whether they address such special cases of human information or
    are intended to be generic.

    On Fri, Sep 25, 2015 at 4:37 AM, Pedro C. Marijuan
    <pcmarijuan.i...@aragon.es <mailto:pcmarijuan.i...@aragon.es>> wrote:

        Dear FISers and all,

        I include below another response to Immanuel post (from
        Guenther). I think he has penned an excellent response--my
        only addition is to expostulate a doubt. Should our analysis
        of the human (or cellular!) communication with the environment
        be related to linguistic practices? In short, my argument is
        that biological self-production becomes "la raison d'etre" of
        communication, both concerning its evolutionary origins and
        the continuous opening towards the environment along the
        different stages of the individual's life cycle. It is cogent
        that the same messenger plays quite different roles in
        different specialized cells --we have to disentangle in each
        case how the impinging "info" affects the ongoing life cycle
        (the impact upon the transcriptome, proteome, metabolome,
        etc.) There is no shortcut to the endless work necessary--wet
        lab & in silico. So I think that Encode and other big projects
        are quite useful in the continuous exploration of biological
        complexity and provide us valuable conceptual stuff--but
        looking for hypothetical big formalisms (I quite agree) is out
        sight. Molecular recognition which is the at the fundamentals
        of biological organization can only provide modest guidelines
        about the main informational architectures of life... beyond
        that, there is too much complexity, endless complexity to
        contemplate, particularly when we try to study multicellular
        organization. Anyhow, this topic of the essential
        informational openness of the individual's life cycle appears
        to me as the Gordian knot to be cut for the advancement of our
        field: otherwise we will never connect meaningfully with the
        endless info flows that interconnect our societies, generated
        from the life cycles of individuals and addressed to the life
        cycles of other individuals. Info sources, channels for info
        flows, and info receptors are not mere Shannonian overtones,
        they symbolically refer to the very info skeleton of our
        societies; or looking dynamically it is the engine of social
        history and of social complexity.

        Well, sorry that I could not express myself better.

        all the best--Pedro

        Günther Witzany wrote:
        Dear all!

        What is the opposite of a linguistic description? a
        non-linguistic description? Please tell me one possible
        explanation of a non-linguistic description. So Im not
        convinced of the sense of the term "information".

        Concerning the "difference" of physical and semantic
        information: What would you prefer in the case of plant
        communication. Does the chemical Auxin represent a physical
        or a semantic information? Auxin is used in hormonal,
        morphogenic, and transmitter pathways. As an
        extracellular signal at the plant synapse, auxin serves to
        react to light and gravity. It also serves as an
        extracellular messenger substance to send electrical signals
        and functions as a synchronization signal for cell division.
        At the intercellular, whole plant level, it supports cell
        division in the cambium, and at the tissue level, it promotes
        the maturation of vascular tissue during embryonic
        development, organ growth as well as tropic responses and
        apical dominance. In intracellular signaling, auxin serves in
        organogenesis, cell development, and differentiation.
        Especially in the organogenesis of roots, for example, auxin
        enables cells to determine their position and their
        identity. These multiple functions of auxin demonstrate that
        identifying the momentary usage (its semantics) is extremely
        difficult because the context (investigation object of
        pragmatics) of use can be very complex and highly diverse,
        although the chemical property remains the same.
        Yes, mathematics is an artificial language. Last century the
        Pythagorean approach, mathematics represents material
        reality, (if we use mathematics we reconstruct creators
        thoughts) was reactivated: Exact science must represent
        observations as well as theories in mathematical equations.
        Then it would be sure to represent reality, because brain
        synapse logics then could express its own material reality.
        But this was proven as error. Prior to all artificial
        languages we learned how to interconnect linguistic
        utterances with practical behavior in socialisation;
        therefore the ultimate meta-language is everyday language
        with its visible superficial grammar and its invisible deep
        grammar that transports the intended meaning. How should
        computers extract deep grammar structures out of measurable
        superficial syntax structures? In the case of ENCODE project
        (to find the human genome primary data structures) this was
        the aim which got financial support of 3 billion dollars with
        the result of detecting the superficial grammar only, nothing
        else.

        Best Wishes
        Guenther
        Am 24.09.2015 um 07:47 schrieb Emanuel Diamant:

        Dear FIS colleagues,

        As a newcomer to FIS, I feel myself very uncomfortable when
        I have to interrupt the ongoing discourse with something
        that looks for me quite natural but is lacking in our
        current public dialog. What I have in mind is that in every
        discussion or argument exchange, first of all, the grounding
        axioms and mutually agreed assumptions should be established
        and declared as the basis for further debating and
        reasoning. Maybe in our case, these things are implied by
        default, but I am not a part of the dominant coalition. For
        this reason, I would dare to formulate some grounding axioms
        that may be useful for those who are not FIS insiders:

        1. *Information is a linguistic description of structures
        observable in a given data set*

        2. Two types of data structures could be distinguished in a
        data set: primary and secondary data structures.

        3. Primary data structures are data clusters or clumps
        arranged or occurring due to the similarity in physical
        properties of adjacent data elements. For this reason, the
        primary data structures could be called physical data
        structures.

        4. Secondary data structures are specific arrangements of
        primary data structures. The grouping of primary data
        structures into secondary data structures is a prerogative
        of an external observer and it is guided by his subjective
        reasons, rules and habits. The secondary data structures
        exist only in the observer’s head, in his mind. Therefore,
        they could be called meaningful or semantic data structures.

        5. As it was said earlier, *Description of structures
        observable in a data set should be called “Information”. *In
        this regard, two types of information must be distinguished
        – *Physical Information and Semantic Information*.

        6. Both are language-based descriptions; however, physical
        information can be described with a variety of languages
        (recall that mathematics is also a language), while semantic
        information can be described only by means of natural human
        language.

        This is a concise set of axioms that should preface all our
        further discussions. You can accept them. You can discard
        them and replace them with better ones. But you can not
        proceed without basing your discussion on a suitable and
        appropriate set of axioms.

        That is what I have to say at this moment.

        My best regards to all of you,

        Emanuel.





-- -------------------------------------------------
        Pedro C. Marijuán
        Grupo de Bioinformación / Bioinformation Group
        Instituto Aragonés de Ciencias de la Salud
        Centro de Investigación Biomédica de Aragón (CIBA)
        Avda. San Juan Bosco, 13, planta X
        50009 Zaragoza, Spain
        Tfno.+34 976 71 3526 <tel:%2B34%20976%2071%203526>  (& 6818)
        pcmarijuan.i...@aragon.es <mailto:pcmarijuan.i...@aragon.es>
        http://sites.google.com/site/pedrocmarijuan/
        -------------------------------------------------

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-- Professor Terrence W. Deacon
    University of California, Berkeley

-- -------------------------------------------------
    Pedro C. Marijuán
    Grupo de Bioinformación / Bioinformation Group
    Instituto Aragonés de Ciencias de la Salud
    Centro de Investigación Biomédica de Aragón (CIBA)
    Avda. San Juan Bosco, 13, planta X
    50009 Zaragoza, Spain
    Tfno. +34 976 71 3526 (& 6818)
    pcmarijuan.i...@aragon.es
    http://sites.google.com/site/pedrocmarijuan/
    -------------------------------------------------



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