Hi Ray,
I just grabbed the source from the cygwin cvs, tared and uploaded it.   On the 
system I used it took <7 minutes.

http://repo.fossology.org/simpleIndex.php?mod=nomoslicense&show=detail&upload=148&item=50608165

We have seen the scheduler problem you describe before.  I think, as long as 
you aren't hitting some system resource, stopping the scheduler and restarting 
it might take care of the problem (btw, v2.0 has a new scheduler).

Bob

On May 23, 2011, at 6:31 AM, Westphal, Raymond W wrote:
> 
> On Friday my customer uploaded Cygwin for analysis. I think it was a zip 
> file. The job ran from 11:23am until I deleted it at around 8am on Sunday. I 
> had to delete it because it caused Fossology scheduler to keep restarting. 
> And that was causing the load average on the server to slowly climb.
>  
> Has anyone had any experience with analyzing Cygwin?
> 
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