The following files will be updated as part of updating to 6.3-RELEASE-p1:
/boot/GENERIC/kernel
/usr/src/sys/conf/newvers.sh
/usr/src/sys/kern/kern_descrip.c
/usr/src/sys/kern/uipc_syscalls.c

I have installed the updates but my question is whether these updates
mean that the system has to be rebooted?

it's in kernel - so yes.
if you have your custom kernel - recompile it.


Secondly, as there seem to be some changes to the kernel, does it mean
I have to build a new custom kernel which I currently use?

just type make in your kernel build directory and make install


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