[Freesurfer] Recon-all question

[Clifford A. Smith, PhD]

Title: Recon-all question

I’ve installed Freesurfer on Mac running Tiger.  Am able to run mri_convert to attain 001.mgz and view with tkmedit without a problem.  Can run recon-all –help and attain the help files, but running recon-all –subjid <subject name> -all (or autorecon1) –mgz does not produce any image output only the following:


Any suggestions?  Thanks.  Cliff


% [Clifford-Smiths-Computer:shared/freesurfer/subjects] Cliff% recon-all -subjid 00139 -autorecon1 -mgz
INFO: SUBJECTS_DIR is /Users/Shared/freesurfer/subjects
########################################
program versions used
$Id: recon-all-nmr,v 1.71 2005/07/11 22:46:53 greve Exp $
$Id: mri_motion_correct2,v 1.9 2004/12/14 03:37:42 greve Exp $
mri_convert --version
 $
$Header: /software/source/minc/progs/rawtominc/rawtominc.c,v 6.13.2.2 2005/03/16 19:02:52 bert Exp $
minctracc.c
$Header: /software/source/registration/mni_autoreg/minctracc/Main/minctracc.c,v 96.11 2004/02/12 05:54:22 rotor Exp $
!p$Header: /software/source/minc/progs/mincresample/mincresample.c,v 6.12.2.1 2005/03/16 19:02:51 bert Exp $
$Header: /software/source/minc/progs/mincaverage/mincaverage.c,v 6.4.2.2 2005/03/16 19:02:49 bert Exp $
$Id: talairach2,v 1.7 2004/08/31 18:07:37 tosa Exp $
mri_convert --version
 $
# $Id: mritotal.in,v 1.12 2004/02/12 05:55:18 rotor Exp $
#  $Id: nu_estimate.in,v 1.1 2003/04/16 14:29:34 bert Exp $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
 $
#######################################
Using mgz format
.


------------------
Clifford Smith, PhD
Assistant Professor of Behavioral Sciences
Rush University Medical Center
312.942.2893

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer