Chacko, The 64bit build of freesurfer will not run on a 32bit machine. Do you have an older version of freesurfer that might be running? What is the output of:
cat $FREESURFER_HOME/build-stamp.txt Are you sure your machine is really 32bits? Run 'uname -m' and if the machine is 64bits, it will say x86_64. Nick > Nick, > Im just running one sample of an Analyze format > image..freesurfer is installed on a Linux OS Centos4 > platform..but its a 32-bit machine. > the sample bert is displayed correctly... > im using tksurfer to display lh.orig and rh.orig.. > Nick,could this be the problem..im using a 32-bit > machine but i ve downloaded the > freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.3-full.tar.gz > version.. > > Regards > > Chacko. > --- Nick Schmansky <[EMAIL PROTECTED]> wrote: > >> Chacko, >> >> What freesurfer distribution is being used and what >> platform is it >> installed upon? >> >> In tksurfer, does the sample subject named 'bert' >> display correctly? >> >> I guess I don't know what you mean by not >> tesselating correctly and not >> displaying the volume correctly. What tool is being >> used to display >> lh.orig or rh.orig? tksurfer? or are you refering >> to the surface >> outlines as shown in tkmedit? >> >> Nick >> >> > >> > No, the nofix surfaces are also displaying just a >> > small piece of the surface..similar to the ?h.orig >> > surfaces. >> > >> > --- Bruce Fischl <[EMAIL PROTECTED]> >> wrote: >> > >> >> hmmm, looks okay. Can you see the ?h.orig.nofix >> >> surfaces okay? >> >> On Thu, 22 >> >> Jun 2006, Chacko Cherian wrote: >> >> >> >> > --- Bruce Fischl <[EMAIL PROTECTED]> >> >> wrote: >> >> > >> >> >> can you send us the recon-all.log file? >> >> >> On Thu, 22 Jun 2006, Chacko Cherian >> >> >> wrote: >> >> >> >> >> >>> yes the filled.mgz is fine...with the >> >> hemispheres >> >> >>> distinctly labelled and no cerebellum. >> >> >>> >> >> >>> --- Bruce Fischl <[EMAIL PROTECTED]> >> >> >> wrote: >> >> >>> >> >> >>>> and does the filled.mgz look correct? Are >> the >> >> >>>> hemisphere separately >> >> >>>> labeled and the cerebellum gone? Also, >> please >> >> >> post >> >> >>>> these to the list so >> >> >>>> other people can answer! >> >> >>>> >> >> >>>> Bruce >> >> >>>> >> >> >>>> >> >> >>>> On Thu, 22 Jun 2006, Chacko Cherian wrote: >> >> >>>> >> >> >>>>> Yes when I load the image in tkmedit I odnt >> >> have >> >> >>>> any >> >> >>>>> problems.Its perfectly clear and >> >> >>>> coronal,horizonatal >> >> >>>>> and sagittal are all correct. >> >> >>>>> >> >> >>>>> --- Bruce Fischl >> <[EMAIL PROTECTED]> >> >> >>>> wrote: >> >> >>>>> >> >> >>>>>> when you load it in tkmedit does it >> display >> >> >>>>>> properly? That is, is the >> >> >>>>>> coronal view really coronal? >> >> >>>>>> On Thu, 22 Jun 2006, Chacko Cherian wrote: >> >> >>>>>> >> >> >>>>>>> Hello all, >> >> >>>>>>> I ran an Analyze format image in >> >> >>>> Fresurfer...just >> >> >>>>>> the >> >> >>>>>>> Morphometry and reconstruction >> tutorial..but >> >> >>>> found >> >> >>>>>>> that it's creating a filled.mgz volume >> but >> >> I'm >> >> >>>>>> having >> >> >>>>>>> a problem in tesselating and creating the >> >> >>>> outputs >> >> >>>>>>> lh.orig and rh.orig for the left and >> right >> >> >>>>>>> hemispheres.It displays a very tiny piece >> of >> >> >> the >> >> >>>>>>> volume. >> >> >>>>>>> Could you please let me know how to >> >> >> troubleshoot >> >> >>>>>> this >> >> >>>>>>> problem.. >> >> >>>>>>> THanks in advance. >> >> >>>>>>> >> >> >>>>>>> Chacko. >> >> >>>>>>> >> >> >>>>>>> >> >> >>>>>>> >> >> >>>>>>> Chacko Cherian >> >> >>>>>>> M.S EE >> >> >>>>>>> Graduate Assistant >> >> >>>>>>> Department of Psychology >> >> >>>>>>> Arizona State University. >> >> >>>>>>> Tempe,AZ. >> >> >>>>>>> >> >> >>>>>>> >> >> >>>>>>> >> >> >>>> >> >> >> >> >> >> __________________________________________________ >> >> >>>>>>> Do You Yahoo!? >> >> >>>>>>> Tired of spam? Yahoo! Mail has the best >> >> spam >> >> >>>>>> protection around >> >> >>>>>>> http://mail.yahoo.com >> >> >>>>>>> >> >> >> >> _______________________________________________ >> >> >>>>>>> Freesurfer mailing list >> >> >>>>>>> Freesurfer@nmr.mgh.harvard.edu >> >> >>>>>>> >> >> >>>>>> >> >> >>>>> >> >> >>>> >> >> >>> >> >> >> >> >> > >> >> >> > >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >>>>>>> >> >> >>>>>>> >> >> >>>>>>> >> >> >>>>>> >> >> >>>>> >> >> >>>>> >> >> >>>>> >> >> >> >> >> >> __________________________________________________ >> >> >>>>> Do You Yahoo!? >> >> >>>>> Tired of spam? Yahoo! Mail has the best >> spam >> >> >>>> protection around >> >> >>>>> http://mail.yahoo.com >> >> >>>>> >> >> >>>>> >> >> >>>>> >> >> >>>> >> >> >>> >> >> >>> >> >> >>> >> >> >> __________________________________________________ >> >> >>> Do You Yahoo!? >> >> >>> Tired of spam? Yahoo! Mail has the best spam >> >> >> protection around >> >> >>> http://mail.yahoo.com >> >> >>> >> >> >>> >> >> >>> >> >> >> >> _______________________________________________ >> >> >> Freesurfer mailing list >> >> >> Freesurfer@nmr.mgh.harvard.edu >> >> >> >> >> > >> >> >> > >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> >> > >> >> > >> __________________________________________________ >> >> > Do You Yahoo!? >> >> > Tired of spam? Yahoo! Mail has the best spam >> >> protection around >> >> > http://mail.yahoo.com >> >> >> > >> > >> > __________________________________________________ >> > Do You Yahoo!? >> > Tired of spam? Yahoo! Mail has the best spam >> protection around >> > http://mail.yahoo.com >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > === message truncated === > > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam protection around > http://mail.yahoo.com > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
