He HweeLing,

what kind of coordinate do you mean? If it's just the voxel coord, then I don't think it matters.

cheers,
Bruce

On Mon, 4 Sep 2006, Lee HL wrote:


Hi Bruce and all,

I wish to convert the MGZ format image into ANALYZE format image.

I used the command line to convert the MGZ format image:
"mri_convert -i brainmask.mgz -o brainmask.img --out_type spm".

When I display the image using SPM, the coordinate (0, 0, 0) appears at the
posterior commissure.  However, when I display the mgz format image using
tkmedit, the coordinate (0, 0, 0) appears at the anterior commissure.

Was I using the correct command line to convert the image?

Thanks!

Cheers,
HweeLing

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