Hi Nick,
On 12. Dec 2006, at 20:48 Uhr, Nick Schmansky wrote:
Sebastian,
Sorry for the oversight. The change to recon-all, as you have
indicated, has been made to our source, and will appear in the next
release.
No, thank you for your great support and software, actually I should
apologize for testing the previous change only half-heartedly. Only
cause I had hacked one of the mni script directly did I not notice the
recon-all issue when asked to test it. So please do not read my mail as
complaining, but rather as clean up related to me properly testing the
change ;).
ahoi
Sebastian
Nick
On Tue, 2006-12-12 at 02:54 +0100, Sebastian Moeller wrote:
Hi Doug, hi list,
recently you implemented a version of mri_nu_correct.mni for me that
allows for better settings for surface coil recordings. I dragged your
change from 3.0.3 into 3.0.4 and just now realised, that it did not do
anything ;), as the recon-all script in 3.0.4 does not process xopts
for mri_nu_correct.mni. I guess in 3.0.3 I used the hacked version of
nu_correct to hide the fact that recon-all dropped the xopts on the
floor, oh my. Anyway recon-all of 3.0.4 only requires the following
two
edits:
line 520 insert:
set xopts = `fsr-getxopts mri_nu_correct.mni $XOptsFile`;
and then replace the original line 521, now line 522 with the
following:
--o nu.mgz --n $NuIterations $xopts)
(basically this adds "$xopts to the creation of cmd").
then it works like it expected.
Thanks for all the tools & the support
Sebastian
--
Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91
Fax.: 04 21 - 2 18 - 90 04
GSM: 01 62 - 3 25 45 59
[EMAIL PROTECTED]
AG Kreiter / FB 2
Institut fuer Hirnforschung III
Abteilung Theoretische Neurobiologie
Universitaet Bremen
Biogarten
Hochschulring 16a
Postfach 33 04 40
28359 Bremen
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