This will nor reorient the data. The --out_orientation is only to be
used when the input orientation is wrong and you want to fix it. Is this
what you want to do?
doug
Fornito, Alexander wrote:
Hi,
I'm trying to convert a series of siemens dicom mosaic format files to analyze format, while reorienting at the same time. Running the command below converts and reorients only the filename specified in the command line (which is the first file in the series), whereas leaving out the --out_orientation flag converts all the files in the series. Is it only possible to convert AND reorient one file at a time? Or is there something I'm missing that would allow me to convert and reorient all the files in the series with a single command?
Thanks,
Alex
mri_convert -it siemens_dicom 93663320 -ot analyze test_ --out_orientation LPS
Alex Fornito
JN Peters Research Fellow
Melbourne Neuropsychiatry Centre and Department of Psychology
National Neuroscience Facility
The University of Melbourne Levels 2 & 3, Alan Gilbert Building
161 Barry St Carlton South Vic 3053 Australia
Ph: +61 3 8344 1861
Fax: +61 3 9348 0469
email: [EMAIL PROTECTED]
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Douglas N. Greve, Ph.D.
MGH-NMR Center
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