I have not implemented it in recon-all yet.
doug
On Fri, 2 Feb 2007, Bruce Fischl wrote:
you would need to add in whatever subcortical components you wanted to
include, as they are excluded from the wm volume
On Fri, 2 Feb 2007, Derin Cobia wrote:
Bruce,
So if I downloaded the dev version of the program I could use it to get
the volumes from subjects processed with 3.0.3? And would adding these
volumes together generate the total volume I'm looking for (including
subcoritical)? Thanks!
-Derin
Hi Derin,
the aseg labeling of cortical gm is not that accurate - the surfaces are
quiet a bit more so. We have a new tool for generating the estimate of the
gm and wm volume from the surfaces called mris_volume and mris_wm_volume.
I
think Doug or Nick has integrated it into the dev version of recon-all.
cheers,
Bruce
On Fri, 2 Feb 2007, Derin Cobia wrote:
I would like to calculate total brain volume (defined as: total white,
gray, and subcortical altogether). Should I take the BrainSegVol and
minus out cerebellum and ventricles, or add the white and gray matter
volumes from mris_anatomical_stats (it seems I remember hearing that
white
matter from mris_anatomical_stats is not reliable)? Thanks.
-Derin
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Douglas N. Greve, Ph.D.
MGH-NMR Center
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