Yes,It is perfectly fine with the --regheader optionmwhich means no problem with geometry info. But how do I fix the talairach.xfm?
Thanks a lot! Chacko. --- Doug Greve <[EMAIL PROTECTED]> wrote: > I mean to just load the orig.mgz into tkmedit and > see if it is oriented > correctly. Assuming that it is oriented correctly, > then it sounds like > the talairach transform is messed up pretty badly. > When you run > tkregister2, try adding --regheader. This will > ignore the info in the > talairaach.xfm file and force it to use the geometry > info. it will > likely be very far off, but the basic orientation > should be ok. > > Chacko Cherian wrote: > > >It has the problem in tkmedit,after I load the > >transform..i checked brainmask.img and T1.img after > >loading the transform and they had this > problem..The > >header and geometry info look fine.. > > > > > >--- Doug Greve <[EMAIL PROTECTED]> wrote: > > > > > > > >>That means that the geometry info in the file is > >>messed up. Where did > >>the data come from? Are the dicoms messed up too? > >> > >>Chacko Cherian wrote: > >> > >> > >> > >>>No, It has the same problem in tkmedit too. > >>> > >>> > >>>--- Doug Greve <[EMAIL PROTECTED]> wrote: > >>> > >>> > >>> > >>> > >>> > >>>>Does it view correctly in tkmedit? > >>>> > >>>>Chacko Cherian wrote: > >>>> > >>>> > >>>> > >>>> > >>>> > >>>>>Hello ALL, > >>>>> > >>>>>Has anybody had trouble with tkregister2..I > >>>>> > >>>>> > >>loaded > >> > >> > >>>>> > >>>>> > >>>>> > >>>>> > >>>>the > >>>> > >>>> > >>>> > >>>> > >>>>>transform and the coronal and horizontal views > >>>>> > >>>>> > >>are > >> > >> > >>>>>mixed up.Coronal view of the subject is coupled > >>>>> > >>>>> > >>>>> > >>>>> > >>>>with > >>>> > >>>> > >>>> > >>>> > >>>>>the horizontal view of the talairach volume. > >>>>> > >>>>>Thanks in advance > >>>>>Regards, > >>>>> > >>>>>Chacko. > >>>>> > >>>>> > >>>>> > >>>>> > >>>>> > >>>>> > >>>>> > >>>____________________________________________________________________________________ > >>> > >>> > >>>> > >>>> > >>>> > >>>> > >>>>>TV dinner still cooling? > >>>>>Check out "Tonight's Picks" on Yahoo! TV. > >>>>>http://tv.yahoo.com/ > >>>>>_______________________________________________ > >>>>>Freesurfer mailing list > >>>>>[email protected] > >>>>> > >>>>> > >>>>> > >>>>> > >>>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>> > >>> > >>>> > >>>> > >>>> > >>>> > >>>>> > >>>>> > >>>>> > >>>>> > >>>>-- > >>>>Douglas N. Greve, Ph.D. > >>>>MGH-NMR Center > >>>>[EMAIL PROTECTED] > >>>>Phone Number: 617-724-2358 > >>>>Fax: 617-726-7422 > >>>> > >>>>In order to help us help you, please follow the > >>>>steps in: > >>>>surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >>>> > >>>> > >>>>_______________________________________________ > >>>>Freesurfer mailing list > >>>>[email protected] > >>>> > >>>> > >>>> > >>>> > >>>> > >>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >>> > >>> > >>> > >>> > >>> > >>> > >>> > >>> > >>____________________________________________________________________________________ > >> > >> > >>>Never miss an email again! > >>>Yahoo! Toolbar alerts you the instant new Mail > >>> > >>> > >>arrives. > >> > >>http://tools.search.yahoo.com/toolbar/features/mail/ > >> > >> > >>> > >>> > >>> > >>> > >>-- > >>Douglas N. Greve, Ph.D. > >>MGH-NMR Center > >>[EMAIL PROTECTED] > >>Phone Number: 617-724-2358 > >>Fax: 617-726-7422 > >> > >>In order to help us help you, please follow the > >>steps in: > >>surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> > >> > >> > >> > >>>_______________________________________________ > >>> > >>> > >>Freesurfer mailing list > >>[email protected] > >> > >> > >> > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > >____________________________________________________________________________________ > >Never miss an email again! > === message truncated === ____________________________________________________________________________________ Finding fabulous fares is fun. Let Yahoo! FareChase search your favorite travel sites to find flight and hotel bargains. http://farechase.yahoo.com/promo-generic-14795097 _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
