Binyam, The recon-all.log indicates that mri_ca_register hit a segmentation fault, which is bad. Can you send me the subject data so that I can try to recreate this segfault in a debugger? You can upload to me via the filedrop:
https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html In the meantime, also look at the brainmask.mgz file with tkmedit and confirm that it is skull-stripped and that the cerebellum is attached. Also check the talairach registration with tkregister2. Nick On Tue, 2007-02-06 at 10:39 -0600, Binyam Nardos wrote: > hi all, > I just ran autorecon2 on one of our subjects (for the second time, > after getting a similar error, i.e. ERROR: mri_ca_register with non- > zero status. I just rerun recon-all with -autorecon2 without > removing/changing anything produced by the previous autorecon2). Is > there any logical place to start to fix the problem or do I have to > rerun mri_ca_register as shown below: > > mri_ca_register -align -nobigventricles -mask brainmask.mgz -T > transforms/talairach.lta > norm.mgz /usr/local/freesurfer//average/RB_all_2006-02-15.gca > transforms/talairach.m3z > > I have attached the recon-all log for reference. > Please advise, > > thanks, > Binyam > > > Binyam Nardos > Cognitive Rehabilitation Research Group > Washington University School of Medicine Box # 8505 > 4444 Forest Park Blvd > St. Louis, MO 63108 > Office: (314) 454-7795 > Fax: (314) 286-1601 > > > > The contents of this e-mail message and any attachments are intended > solely for the addressee(s) named in this message. This communication > is intended to be and to remain confidential and may be subject to > applicable physician/patient and/or work product privileges. If you > are not the intended recipient of this message, or if this message has > been addressed to you in error, please immediately alert the sender by > reply e-mail and then delete this message and its attachments. > > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
