Whoops. Disregard the previous question. Somehow I forgot to add the
subjectname file.
Sorry for cluttering up everyone's inbox,
Avram
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Avram Holmes
Department of Psychology
Harvard University
1210 William James Hall Phone:(617) 495-0790
33 Kirkland Street Fax:(617) 495-3728
Cambridge, MA 02138, USA Email: [EMAIL PROTECTED]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
On Tue, 15 May 2007, Avram Holmes wrote:
All,
I'm an getting an error when I attempt to run autoreg-sess
This is the command I am running...
autoreg-sess -s c07 -d . -fsd Flanker
The following is the error I get.
Logfile is
/net/daplab1/Raid/shared/exp/CONCON/fMRI/functional/log/autoreg-sess.log
setenv SUBJECTS_DIR /exp/CONCON/fMRI/structural/
_______________________________________________________
--- /net/daplab1/Raid/shared/exp/CONCON/fMRI/functional/c07 -----------
_______________________________________________________
ERROR: (/net/daplab1/Raid/shared/exp/CONCON/fMRI/functional/c07) cannot find
/net/daplab1/Raid/shared/exp/CONCON/fMRI/functional/c07/subjectname
... Continuing
Tue May 15 11:05:35 EDT 2007
autoreg-sess completed with ERRORS
Any ideas about what I could do to fix this?
Thanks,
Avram
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Avram Holmes
Department of Psychology
Harvard University
1210 William James Hall Phone:(617) 495-0790
33 Kirkland Street Fax:(617) 495-3728
Cambridge, MA 02138, USA Email: [EMAIL PROTECTED]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
On Thu, 10 May 2007, Avram Holmes wrote:
To anyone not outside enjoying the nice weather,
I have recently completed running intergroupavg-sess
intergroupavg-sess -analysis taumax30_stc_smooth6 -contrast Rcue_v_Ncue
-group1
LowTrauma -group2 HighTrauma -intergroup LowTrauma_v_HighTrauma -space tal
Only 'minsig' and 'sig' files were generated. However, no sig.bhdr files
were
created. I just wanted to check to see if everything is as it should be.
Also, when I run tkmedit-sess in an attempt to view the data on both the
between
and within group (where all the normal files were created) analyses...
tkmedit-sess -analysis taumax30_stc_smooth6 -s LowTrauma_v_HighTrauma
-isxavg
random -contrast Rcue_v_Ncue -space tal -d .
I recieve the following error...
--------------------------------------------------------------
tkmedit-sess logfile is
/Raid/shared/exp/REfMRI/fMRI_FPPREW/functional/log/tkmedit-sess.log
--------------------------------------------------------------
setenv SUBJECTS_DIR /exp/REfMRI/fMRI_FPPREW/structural/
INFO: Found session in: ./LowTrauma_v_HighTrauma
INFO: LowTrauma_v_HighTrauma is a group average
INFO: Found session in: ./LowTrauma_v_HighTrauma
INFO: LowTrauma_v_HighTrauma is a group average
INFO: subject is talairach
INFO: subject is talairach
ERROR: subject talairach does not exist in data base
SUBJECTS_DIR: /exp/REfMRI/fMRI_FPPREW/structural/
Do I have to take any steps to add the talairach brain to my studies
'structural' folder so that I can use tkmedit-sess or is this error related
to
something else.
Thanks in advance for any help you can offer,
Avram
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Avram Holmes
Department of Psychology
Harvard University
1210 William James Hall Phone:(617) 495-0790
33 Kirkland Street Fax:(617) 495-3728
Cambridge, MA 02138, USA Email: [EMAIL PROTECTED]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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