[Freesurfer] mri_motion_correct.fsl problems

[Catherine Hartley]

Hi,




Thanks in advance,
Cate

I'm still having problems with the rawavg.mgz volume being generated with incorrect orientations. I gave Jenni two 00?.mgz volumes and she was able to generate a correctly-oriented rawavg. Our two log files look very different, but I'm not able to figure out the problem by looking at them. To start with, the i_ras, j_ras, and k_ras value for the 00?.mgz volumes are different in each of our log files. Mine also has several warnings in which it says that it cannot read a matfile, and that the hist.orient value is not valid. I've attached the log files. Any suggestions would be very very welcome.

rawavg.mgz.mri_motion_correct.fsl_jenni.log
Description: Binary data

rawavg.mgz.mri_motion_correct.fsl_cate.log
Description: Binary data

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