It still doesn't work. The error message is the same as the one I previously sent. Am I doing something wrong?
mri_surf2surf --srcsubject $SUBJECT --sval-xyz smhead.surf --trgsubject ico --trgicoorder 7 --tval /imaging/dw01/simulation/subjects/p002/surf/p002_outer_skin --tval-xyz --hemi lh > > Try it without the --sval (it will get the sval from the xyz in the > surface). > > doug > > > > > On Sun, 17 Feb 2008, Daniel Wakeman wrote: > >> Hi Doug, >> >> Thanks. >> >> I tried this and got the following: >> >> [EMAIL PROTECTED] test2bem]$ mri_surf2surf --srcsubject $SUBJECT --sval-xyz >> smhead.surf --sval /imaging/dw01/simulation/subjects/p002/surf/ >> --trgsubject ico --trgicoorder 7 --tval >> /imaging/dw01/simulation/subjects/p002/surf/p002_outer_skin --tval-xyz >> --hemi lh >> Running mri_surf2surf on l25 >> surf2surf_nnfr(): Vals and Reg dimension mismatch >> nVals = 159416, nReg 153314 >> Segmentation fault >> Cut-and-paste the following info into your FreeSurfer problem report: >> --------------------------------------------------------------------- >> >> FREESURFER_HOME: /opt/freesurfer/ >> >> Build stamp: freesurfer-Linux-centos4-stable-pub-v4.0.1 >> >> RedHat release: Red Hat Enterprise Linux WS release 4 (Nahant Update 5) >> >> Kernel info: Linux 2.6.9-55.0.9.ELsmp i686 >> >> --------------------------------------------------------------------- >> Please include the following additional information in your report: >> >> 1) subject name: p002 >> 2) the entire command-line executed: above >> 3) the error message generated: above >> 4) optionally include the subject's /script/recon-all.log: NA >> >> See also: http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> >> >> >>> >>> Try this instead: >>> >>> mri_surf2surf --srcsubject $SUBJECT >>> --sval-xyz $SUBJECTS_DIR/$SUBJECT/surf/lh.smseghead >>> --trgsubject ico >>> --tval $SUBJECTS_DIR/$SUBJECT/surf/$SUBJECT'_outer_skull' --tval-xyz >>> --hemi lh >>> >>> >>> It is admittedly a little obtuse. mri_surf2surf was originally >>> programmed to accept surface overlay and not surfaces themselves. >>> --sval-xyz indicates that the input is a surface. --tval-xyz indicates >>> that the output should be saved as a surface instead of an overlay. >>> >>> doug >>> >>> >>> Daniel Wakeman wrote: >>> >>>> Hi, >>>> >>>> I have a question (I believe about mri_surf2surf). First, I'll >>>> describe >>>> my goal: >>>> >>>> I want to take a surface created with mri_tessellate and modified with >>>> mris_smooth and convert it to an isomorphic equally subdivided >>>> icosahedron >>>> (like mri_watershed creates). >>>> >>>> e.g. take the lh.smseghead created by mkheadsurf and resample it: >>>> >>>> mri_surf2surf --srcsubject $SUBJECT --srcsurfval >>>> $SUBJECTS_DIR/$SUBJECT/surf/lh.smseghead --src_type surf --trgsubject >>>> ico >>>> --trgsurfval $SUBJECTS_DIR/$SUBJECT/surf/$SUBJECT'_outer_skull' --hemi >>>> lh >>>> >>>> I get the following error: >>>> >>>> ERROR: could not determine type of >>>> /imaging/dw01/simulation/subjects/subject_02/surf/lh.smseghead >>>> >>>> If this is possible, I want to know how I can correct my command. >>>> >>>> Cheers, >>>> Dan >>>> >>>> >>>> >>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> [EMAIL PROTECTED] >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> In order to help us help you, please follow the steps in: >>> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> >>> >>> >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > [EMAIL PROTECTED] > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > In order to help us help you, please follow the steps in: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > -- _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
