On Jun 18, 2008, at 6:51 PM, Nick Schmansky wrote:
Sebastian,
responses:
point 1) yes, sorry, no freeview yet for the mac. still trying to get
the wxWidgets library (a relatively new one for us) to work on the mac
with the freeview code. freeview is still very new though.
Ah, that is what I thought, thanks for the confirmation.
point 2) we just recently got a 64bit mac (the old was was a mac mini,
which are 32b), so we do intend to get a 64b leopard-i686 release out.
Oh, great, I am looking forward to that. On a related note, the
current FSL versions for macosx are built as fat-binaries, that is
they contain 32bit and 64bit versions, which are picked at run time,
maybe this is also possible for freesurfer, so you only need to
package one dmg per OS version?
point 3) looking into this (scuba crash). i think scuba2 works
though.
Unfortunatelly scuba2 also crashes (report later in this mail).
Luckily, for me, I do not really use scuba in my workflow, so I do not
bother about this too much...
Thanks for the feedback
Well, thanks for supplying and supporting this powerful toolkit...
ahoi & thanks
Sebastian
Nick
Process: scuba2.bin [21175]
Path: /opt/freesurfer//bin/scuba2.bin
Identifier: scuba2.bin
Version: ??? (???)
Code Type: X86 (Native)
Parent Process: tcsh [21172]
Date/Time: 2008-06-19 09:26:37.804 +0200
OS Version: Mac OS X 10.5.3 (9D34)
Report Version: 6
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000
Crashed Thread: 0
Thread 0 Crashed:
0 libSystem.B.dylib 0xffff132f __longcopy + 303
1 libSystem.B.dylib 0xffff086e __memcpy + 206
2 libvtktiff.5.0.dylib 0x01e09f05 DumpModeEncode + 53
3 scuba2.bin 0x0013cd84
std::_Rb_tree<std::basic_string<char, std::char_traits<char>,
std::allocator<char> >, std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool>,
std::_Select1st<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >,
std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >,
std::allocator<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >
>::_M_erase(std::_Rb_tree_node<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >*) + 711076
4 scuba2.bin 0x0013b07d
std::_Rb_tree<std::basic_string<char, std::char_traits<char>,
std::allocator<char> >, std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool>,
std::_Select1st<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >,
std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >,
std::allocator<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >
>::_M_erase(std::_Rb_tree_node<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >*) + 703645
5 scuba2.bin 0x0013b9ef
std::_Rb_tree<std::basic_string<char, std::char_traits<char>,
std::allocator<char> >, std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool>,
std::_Select1st<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >,
std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >,
std::allocator<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >
>::_M_erase(std::_Rb_tree_node<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >*) + 706063
6 scuba2.bin 0x0013ba85
std::_Rb_tree<std::basic_string<char, std::char_traits<char>,
std::allocator<char> >, std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool>,
std::_Select1st<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >,
std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >,
std::allocator<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >
>::_M_erase(std::_Rb_tree_node<std::pair<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const, bool> >*) + 706213
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0x00040000 ebx: 0x00000000 ecx: 0xfcf39218 edx: 0xfffc0000
edi: 0x00040000 esi: 0x030bc800 ebp: 0xbfffe03c esp: 0xbfffe030
ss: 0x0000001f efl: 0x00010246 eip: 0xffff132f cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
cr2: 0x00000000
Binary Images:
0x1000 - 0x1bcfff +scuba2.bin ??? (???)
<fed74e651ecd0ef81eb56834021f2084> /opt/freesurfer/bin/scuba2.bin
0x232000 - 0x2e2fe9 +libGLU.1.dylib ??? (???) /usr/X11/lib/libGLU.
1.dylib
0x2fd000 - 0x34afe7 +libGL.1.dylib ??? (???)
<f96baeea46fa05910212d7427da5f33a> /usr/X11/lib/libGL.1.dylib
0x377000 - 0x38bfe7 +libXmu.6.dylib ??? (???)
<4368a7afa86da654c52e64ba19a9097b> /usr/X11/lib/libXmu.6.dylib
0x394000 - 0x3dfff8 +libXt.6.dylib ??? (???)
<d700ce75d38c60146177b10c3883f10d> /usr/X11/lib/libXt.6.dylib
0x3f4000 - 0x3f9ffc +libSM.6.dylib ??? (???)
<1a5a19fa53bdce9d344782a05db3c4e7> /usr/X11/lib/libSM.6.dylib
0x3ff000 - 0x410ff7 +libICE.6.dylib ??? (???)
<0ed3bdd6f53b07a00ef27fc3577f283a> /usr/X11/lib/libICE.6.dylib
0x419000 - 0x425ffa +libXext.6.dylib ??? (???)
<a94a1adf7793da948691b99b4777e2e1> /usr/X11/lib/libXext.6.dylib
0x42d000 - 0x518fe7 +libX11.6.dylib ??? (???)
<cc5a62e8982326ffe327eafb901129d3> /usr/X11/lib/libX11.6.dylib
0x53a000 - 0x53cfef +libXdmcp.6.dylib ??? (???)
<6f2b16b27bab3a08bd635d8e56bfe9f6> /usr/X11/lib/libXdmcp.6.dylib
0x541000 - 0x541ff1 +libXau.6.dylib ??? (???)
<cd091bf5ae82c18ee03a9b4f6bb93d57> /usr/X11/lib/libXau.6.dylib
0x546000 - 0x5a2ff8 +libvtkWidgets.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkWidgets.5.0.dylib
0x5c4000 - 0xa9eff3 +libvtkGraphics.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkGraphics.5.0.dylib
0xbd8000 - 0xeb6ff7 +libvtkImaging.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkImaging.5.0.dylib
0xf77000 - 0x10fbfe1 +libvtkFiltering.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkFiltering.5.0.dylib
0x11cf000 - 0x12e5ff3 +libvtkCommon.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkCommon.5.0.dylib
0x136b000 - 0x1386ff2 +libvtksys.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtksys.5.0.dylib
0x1394000 - 0x14cbff4 +libvtkHybrid.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkHybrid.5.0.dylib
0x154a000 - 0x1572ff3 +libvtkexoIIc.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkexoIIc.5.0.dylib
0x1579000 - 0x15aafef +libvtkNetCDF.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkNetCDF.5.0.dylib
0x15b4000 - 0x18c0ffb +libvtkVolumeRendering.5.0.dylib ??? (???) /
opt/freesurfer/lib/vtk/lib/libvtkVolumeRendering.5.0.dylib
0x1ade000 - 0x1c30ff2 +libvtkRendering.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkRendering.5.0.dylib
0x1d46000 - 0x1d4dfff +libvtkftgl.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkftgl.5.0.dylib
0x1d53000 - 0x1d76fe0 +libvtkexpat.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkexpat.5.0.dylib
0x1d7e000 - 0x1de2ff7 +libvtkfreetype.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkfreetype.5.0.dylib
0x1dfe000 - 0x1e42fff +libvtktiff.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtktiff.5.0.dylib
0x1e4c000 - 0x1e6bffb +libvtkjpeg.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkjpeg.5.0.dylib
0x1e72000 - 0x1e93fef +libvtkpng.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkpng.5.0.dylib
0x1e9b000 - 0x1ea7feb +libvtkzlib.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkzlib.5.0.dylib
0x1ead000 - 0x20f9fe7 +libvtkIO.5.0.dylib ??? (???) /opt/freesurfer/
lib/vtk/lib/libvtkIO.5.0.dylib
0x21e2000 - 0x21f8fe7 +libvtkDICOMParser.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkDICOMParser.5.0.dylib
0x2205000 - 0x2237ff2 +libvtkVolumeRenderingTCL.5.0.dylib ???
(???) /opt/freesurfer/lib/vtk/lib/libvtkVolumeRenderingTCL.5.0.dylib
0x2243000 - 0x22e3ff7 +libvtkRenderingTCL.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkRenderingTCL.5.0.dylib
0x2303000 - 0x23d4ff2 +libvtkFilteringTCL.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkFilteringTCL.5.0.dylib
0x2405000 - 0x2430ff2 +libvtkWidgetsTCL.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkWidgetsTCL.5.0.dylib
0x2437000 - 0x248aff2 +libvtkHybridTCL.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkHybridTCL.5.0.dylib
0x2499000 - 0x258fff2 +libvtkGraphicsTCL.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkGraphicsTCL.5.0.dylib
0x25bf000 - 0x2636ff2 +libvtkImagingTCL.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkImagingTCL.5.0.dylib
0x264e000 - 0x26c4ff2 +libvtkIOTCL.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkIOTCL.5.0.dylib
0x26e0000 - 0x276cff8 +libvtkCommonTCL.5.0.dylib ??? (???) /opt/
freesurfer/lib/vtk/lib/libvtkCommonTCL.5.0.dylib
0x278e000 - 0x2c0bff3 +libKWWidgets.dylib ??? (???) /opt/freesurfer/
lib/KWWidgets/lib/KWWidgets/libKWWidgets.dylib
0x2da7000 - 0x2db2feb libXplugin.1.dylib ??? (???)
<b175d293d67060cbf50aa111b2ab41b0> /usr/lib/libXplugin.1.dylib
0x2dbb000 - 0x2dd1fe7 com.apple.CoreVideo 1.5.1 (1.5.1)
<ed7bb95fb94817ea3212090aac5c65f3> /System/Library/Frameworks/
CoreVideo.framework/Versions/A/CoreVideo
0xa000000 - 0xa07cfef +libtcl8.4.dylib ??? (???) /opt/freesurfer/
lib/tcltktixblt/lib/libtcl8.4.dylib
0xb000000 - 0xb0a4fff +libtk8.4.dylib ??? (???)
<09a6ab5749f362ad8838bfe610a8f33f> /opt/freesurfer/lib/tcltktixblt/lib/
libtk8.4.dylib
0x8fe00000 - 0x8fe2da53 dyld 96.2 (???)
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0x90462000 - 0x905c2ff3 libSystem.B.dylib ??? (???)
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0x93611000 - 0x9364fff7 libGLImage.dylib ??? (???)
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ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/
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libobjc.A.dylib
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libSystem.B.dylib
--
Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91
Fax.: 04 21 - 2 18 - 90 04
GSM: 0 15 77 - 1 90 31 41
[EMAIL PROTECTED]
AG Kreiter / FB 2
Institut fuer Hirnforschung III
Abteilung Theoretische Neurobiologie
Universitaet Bremen
Biogarten
Hochschulring 16a
Postfach 33 04 40
28359 Bremen
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