Hi Martin,
I think "recon-all -autorecon2-cp -autorecon3" should be fine (it's a
superset of the -wm stuff).
Bruce
On Thu, 28 Aug 2008, Martin Kavec wrote:
Greetings to all,
I have several pathological subjects, which need substantial editing involving
removing of dura reminders, filling WM due to the lesions, and adding control
points due to the WM atrophy. I ran "recon-all -all" first to have initial
reconstruction, which helps me to focus on correcting the earlier mentions
problems. I have corrected brainmask, wm, and created control points, and now
I wonder if re-running "recon-all -autorecon2-cp -autorecon3" would be
sufficient to get correct results, or should better run
separately "recon-all -autorecon2-cp" followed
by "recon-all -autorecon2-wm -autorecon3"?
Thanks in advance,
Martin
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