Hi Prapti, yesterday I had a similar question and went to search the wiki page to educate myself more, after Bruce responce. The following webpage defines the steps taken during the options you asks:
http://surfer.nmr.mgh.harvard.edu/fswiki/OtherUsefulFlags There you can see that your -autorecon2-pial is a subset of -autorecon2-cp, and thus is redundant. Best, Martin On Friday 29 August 2008 07:06:52 Prapti Gautam wrote: > Hi, > > Is it possible to run recon-all so that both control point edits and > brain volumes can be processed with a single command? > > Currently I use > > recon-all -autorecon2-cp -autorecon3 -subjid > for corrections to control points > > and > recon-all -autorecon2-pial -autorecon3 -subjid > for corrections to brain volume > > but is there another way so that when a brain needs corrections with > both control points and brain volume, both can be edited with a single > command at the same time so that I save on processing times?? > > Thanks, > > Prapti > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- ********************************** Senior Clinical Research Associate MRI Unit of the Department of Radiology Erasme Hospital Lennik Street 808 B-1070 Brussels BELGIUM tel: +32-2-555-4325 fax: +32-2-555-3994 email: [EMAIL PROTECTED] ********************************** ----------------------------------------------- Find a way, or make one! _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
