Is that disk full? Looks like lh.ces.nii exists but is not the right size.
doug
N. Eiji Nawa wrote:
Hi:
I am doing the freesurfer tutorial (http://surfer.nmr.mgh.harvard.edu/
fswiki/FsFastTutorial), but got an error while running the Random
Effects Surface-based Group Analysis section.
The command line was:
mri_glmfit --y lh.ces.nii --osgm --mask ../lh.mask.nii --glmdir
lh.rfx.osgm --nii --surf fsaverage lh
and this is the terminal output:
Reading source surface /Applications/freesurfer/subjects/buckner_data/
tutorial_subjs/fsfast-tutorial//fsaverage/surf/lh.white
reading group avg surface area 822 cm^2 from file
Reading in average area /Applications/freesurfer/subjects/
buckner_data/tutorial_subjs/fsfast-tutorial//fsaverage/surf/
lh.white.avg.area.mgh
Number of vertices 163842
Number of faces 327680
Total area 65416.648438
AvgVtxArea 0.399267
AvgVtxDist 0.721953
StdVtxDist 0.195470
$Id: mri_glmfit.c,v 1.138.2.1 2007/09/12 15:38:19 nicks Exp $
cwd /Applications/freesurfer/subjects/buckner_data/tutorial_subjs/
fsfast-tutorial/fb1-analysis-study/group-analysis-tut/sm-gamma-fwhm5/
odd-v-0
cmdline mri_glmfit --y lh.ces.nii --osgm --mask ../lh.mask.nii --
glmdir lh.rfx.osgm --nii --surf fsaverage lh
sysname Darwin
hostname cerezo.cis.atr.jp
machine Power Macintosh
user eiji
FixVertexAreaFlag = 1
UseMaskWithSmoothing 1
OneSampleGroupMean 1
y /Applications/freesurfer/subjects/buckner_data/tutorial_subjs/
fsfast-tutorial/fb1-analysis-study/group-analysis-tut/sm-gamma-fwhm5/
odd-v-0/lh.ces.nii
logyflag 0
usedti 0
mask ../lh.mask.nii
maskinv 0
glmdir lh.rfx.osgm
DoFFx 0
Creating output directory lh.rfx.osgm
Loading y from /Applications/freesurfer/subjects/buckner_data/
tutorial_subjs/fsfast-tutorial/fb1-analysis-study/group-analysis-tut/
sm-gamma-fwhm5/odd-v-0/lh.ces.nii
ERROR: Read 819210, expected 41943552
niiRead(): error reading from /Applications/freesurfer/subjects/
buckner_data/tutorial_subjs/fsfast-tutorial/fb1-analysis-study/group-
analysis-tut/sm-gamma-fwhm5/odd-v-0/lh.ces.nii
ERROR: loading y /Applications/freesurfer/subjects/buckner_data/
tutorial_subjs/fsfast-tutorial/fb1-analysis-study/group-analysis-tut/
sm-gamma-fwhm5/odd-v-0/lh.ces.nii
I am not quite sure what is in 'lh.ces.nii' - from the file's time
stamp it looks like it was not generated during the tutorial (Jun 19
2007).
Any help or comment will be very helpful - I am basically clueless...
Thanks a lot in advance!!!
Eiji (below is the summary of my environment and problem)
--
FREESURFER_HOME: /Applications/freesurfer
Build stamp: freesurfer-Darwin-tiger-ppc-stable-pub-v4.0.5
Kernel info: Darwin 8.11.0 Power Macintosh (Mac OS 10.4.11 on a G5)
SUBJECTS_DIR: /Applications/freesurfer/subjects/buckner_data/
tutorial_subjs/fsfast-tutorial/
which mri_glmfit: /Applications/freesurfer/bin/mri_glmfit
pwd: /Applications/freesurfer/subjects/buckner_data/tutorial_subjs/
fsfast-tutorial/fb1-analysis-study/group-analysis-tut/sm-gamma-fwhm5/
odd-v-0
command line: /Applications/freesurfer/subjects/buckner_data/
tutorial_subjs/fsfast-tutorial/fb1-analysis-study/group-analysis-tut/
sm-gamma-fwhm5/odd-v-0
error message: ERROR: Read 819210, expected 41943552
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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