I renamed them all to "I.1, I.2, ..., I.8000" (there are 8000 images total), and I got the same error messages. (With the "-it ge" option, it is still looking for the old filename, it seems)
[matl...@occipital new_func]$ mri_convert I.1 -it lx -ot spm "image" mri_convert I.1 -it lx -ot spm image $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from I.1... genesisRead(): can't determine file name format for /raid2/fmri5/LDProj/BOSEN/functional/new_func/I.1 [matl...@occipital new_func]$ mri_convert I.1 -it ge -ot spm "image" mri_convert I.1 -it ge -ot spm image $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from I.1... fname_format : /raid2/fmri5/LDProj/BOSEN/functional/new_func/I.%03d genesisRead(): error opening file /raid2/fmri5/LDProj/BOSEN/functional/new_func/I.001 [matl...@occipital new_func]$ mri_convert I.1 -it dicom -ot spm "image" mri_convert I.1 -it dicom -ot spm image $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from I.1... Starting DICOMRead2() dcmfile = /raid2/fmri5/LDProj/BOSEN/functional/new_func/I.1 dcmdir = /raid2/fmri5/LDProj/BOSEN/functional/new_func ERROR: /raid2/fmri5/LDProj/BOSEN/functional/new_func/I.1 is not a dicom file Douglas N Greve wrote: > can you rename your files to remove the .s01? > > Chris Watson wrote: > >> Hello, >> I'm trying to use mri_convert to convert old (~1999) functional data >> that was acquired on a GE LX scanner. However, nothing seems to work. >> I'm running version 4.4.0 on RHEL4 x86_64. Here's my command line: >> (results are similar if I omit the -in_type flag) >> >> [matl...@occipital functional]$ mri_convert I.001.s01 -it lx -ot spm "image" >> mri_convert I.001.s01 -it lx -ot spm image >> $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ >> reading from I.001.s01... >> genesisRead(): can't determine file name format for >> /raid2/fmri5/LDProj/BOSEN/functional/I.001.s01 >> >> [matl...@occipital functional]$ mri_convert I.001.s01 -it ge -ot spm "image" >> mri_convert I.001.s01 -it ge -ot spm image >> $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ >> reading from I.001.s01... >> fname_format : /raid2/fmri5/LDProj/BOSEN/functional/I.%03d >> genesisRead(): error opening file /raid2/fmri5/LDProj/BOSEN/functional/I.001 >> >> [matl...@occipital functional]$ mri_convert I.001.s01 -it dicom -ot spm >> "image" >> mri_convert I.001.s01 -it dicom -ot spm image >> $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ >> reading from I.001.s01... >> Starting DICOMRead2() >> dcmfile = /raid2/fmri5/LDProj/BOSEN/functional/I.001.s01 >> dcmdir = /raid2/fmri5/LDProj/BOSEN/functional >> ERROR: /raid2/fmri5/LDProj/BOSEN/functional/I.001.s01 is not a dicom file >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
