Easiest to save the annotation under a different name, then run mris_anatomical_stats -mgz -f stats/lh.new.aparc.stats -b -a label/lh.new.aparc.annot subjectname
doug Amorim, Edilberto wrote: > Dear freesurfers, > > > Foremost, I want to thank all the fellows freesurfeers that help us out in > the mailing list. This is an amazing support. I'm a beginner working with > FreeSurfer - your help is very appreciated. I've also searched in the e-mail > list archives, but did not find the answer to my question. > > After troubleshooting my output and running recon-all - autorecon-2cp –s > <subjid>, some new labeling errors were created in tksurfer when opening the > file aparc.annot. So, I expanded the boundary of existing regions, fixing the > labels that were misplaced > (http://surfer.nmr.mgh.harvard.edu/fswiki/tksurfer_labeledit). Posteriorly, I > exported this new annotation, re-opened the file, and the changes I made were > there still. > > I’m analyzing volumes using the aparc2table volumes in the SPSS. So, after > editing the labels, I created an aparc2table, but my edits did not cause any > change in the parcellation volumes. I tried running –autorecon3, however the > tksurfer surface generated did not keep the changes I made previously, > erasing the edits back to the previous boundaries. > > How should I proceed to have the edits included on an aparc2table. Is it > possible? Do you have any other suggestion about how to proceed with that? Is > this editing used only for qdec analysis? > > Thank you all for your help! > > > Best Regards, > > > > Edilberto Amorim > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
