Hi Allison and Bruce, Thanks for your kind explanations and the website mentioned http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat. I am curious why I can not directly find this website from the main interface http://surfer.nmr.mgh.harvard.edu/fswiki. Is there a website listing all the great links. Thanks.
Liang 2010/3/15 Allison Stevens <astev...@nmr.mgh.harvard.edu> > Liang, > You can find instructions on how to do this here: > http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat > > Sometimes using mri_convert will cause the orientation to be off so you may > want to follow those instructions instead. > Allison > > -- > > On Sat, 13 Mar 2010, Bruce Fischl wrote: > > Hi Liang, >> >> you should just be able to use the -rl (reslice like) option in >> mri_convert and give the orig/001.mgz as the target. >> >> cheers >> Bruce >> >> On Fri, 12 Mar 2010, liang >> wang wrote: >> >> Hi FS experts, >>> >>> I find that FS does make a great skullstrip and extract a perfect brain >>> (ie. >>> brain.mgz). I am thinking to register this brain to MNI152 standard space >>> using FSL. Does anyone know how to transfer the brain (256.^3, 1mm ) to >>> subject-specific native space (224*256*176, 1mm). Thanks in advance. >>> >>> Liang >>> >>> >>> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Liang Wang, PhD Postdoctoral Fellow Woodward Lab Department of Psychiatry University of British Columbia BC Mental Health & Addiction Services 938 West 28th Avenue Vancouver BC V5Z 4H4 Telephone: 1-604-875-2000 (ext. 4735) Fax: 1-604-875-3871 Email: wangl...@gmail.com
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