what is the value of the binary volume? You have to tell mri_cor2label that with --id <binary value> I think.
cheers Bruce On Sun, 11 Apr 2010, John Gelburg wrote: > I am sorry, but I still struggle to make it work :( > Here is my syntax: > mri_cor2label --i my_Analyze_mask.nii --l ./freeSurferMask.label > I am getting "ERROR: must supply a label id" error message. > I do not have any label id, because it's my custom mask, which was created > in the SPM. > > On Fri, Apr 9, 2010 at 11:14 PM, Douglas N Greve > <[email protected]>wrote: > >> It will still work. >> >> from mri_cor2label --help : >> >> Note: the name of this program is a bit misleading as it will operate >> on anything readble by mri_convert (eg, mgz, mgh, nifti, bhdr, >> analyze, etc). >> >> >> John Gelburg wrote: >> >>> thanks, but isn't COR volume and my ANALYZE image is not the same thing? >>> >>> On Fri, Apr 9, 2010 at 8:02 PM, Douglas N Greve < >>> [email protected] <mailto:[email protected]>> wrote: >>> >>> try mri_cor2label >>> >>> John Gelburg wrote: >>> >>> Hi, >>> >>> I have ANLYZE binary mask which I would like to convert to >>> FreeSurfer labels. Is there any more automatic way to do it >>> than loading it as an overlay and then selecting manually as a >>> label? >>> >>> Thanks for help, >>> John >>> >>> ------------------------------------------------------------------------ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> [email protected] >>> <mailto:[email protected]> >>> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> -- Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> [email protected] <mailto:[email protected]> >>> >>> Phone Number: 617-724-2358 Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> >>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> [email protected] >> Phone Number: 617-724-2358 Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >> > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
