Thanks, that should be helpful. Is there a way to use mris_anatomical_stats on the .annot file that the cluster correction creates within the qdec analysis folder, or do I need to map the annotation to a subject in order to use mris_anatomical_stats? If I try to run mris_anatomical_stats on the .annot file in the qdec analysis folder the program tries to look for /mri/wm.mgz, which doesn't exist.
On 4/9/10 3:26 PM, "Nick Schmansky" <ni...@nmr.mgh.harvard.edu> wrote: or you can use the -c option of mris_anatomical_stats to extract the colortable from the .annot file, edit the colors in that colortable, and then specify that colortable with the -colortable option of tksurfer. n. On Fri, 2010-04-09 at 14:49 -0400, Douglas N Greve wrote: > The only "easy" way to do it is to create individual labels for each > cluster (using the label option or mri_annotation2label), then use > mris_label2annot and specify your own color table. > > doug > > Dankner, Nathan (NIH/NIMH) [F] wrote: > > Hi all, > > > > I am running cluster corrections on data and attempting to display the > > resulting cluster maps. Is it possible to make all of the clusters in an > > annotation the same color? And if so, how? As it stands now, all of the > > clusters are given a different color. Thanks for your help, > > > > Nathan > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
