If you're going to continue to use stable3 then you will need to have an old version of FSL (the ip program is an FSL program from several versions ago). Can you start using the new version of FSFAST?
doug swood...@nmr.mgh.harvard.edu wrote: > Additional info: > > FREESURFER_HOME: /usr/local/freesurfer/stable3 > > Build stamp: freesurfer-Linux-centos4_x86_64-stable-v3.0.5-20070714 > > RedHat release: CentOS release 5.5 (Final) > > Kernel info: Linux 2.6.18-194.8.1.el5 x86_64 > > NMR Center info (/space/freesurfer exists): > > Does this give you the info you're looking for? > > Thanks, > > Sandra > > > > > >> which version are you using? >> >> swood...@nmr.mgh.harvard.edu wrote: >> >>> Hello everyone, >>> >>> I keep encountering the same error when running some preprocessing steps >>> (spatial smooting part). >>> >>> I run the command line: >>> >>> preproc-sess -s CD_DMRFASL_pat4 -df sessdirfile -mcout fmc5 -fwhm 5 >>> -smin >>> fmc5 -smout fmcsm5 >>> >>> And I encounter this error: >>> >>> ERROR: cannot find /usr/pubsw/packages/fsl/current/bin/ip >>> ERROR: ipfsl failed >>> ERROR: spatialsmooth-sess failed >>> >>> Any help/advice would be much appreciated! >>> >>> Thanks, >>> >>> Sandra >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >> >> >> > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
