How did you re-orient your anatomicals? Was the monkey in the sphinx position?
doug Krishna Srihasam wrote: > > Hi, > > > > I have a question regarding overlay of functional activations on a > freesurfer map. After much work, I flattened my monkey brain. But, I > just realized that the input volume , which I used to generate the > flat maps, had orientation set to LIA. I want to over lay my > functional activations, which are in RAS orientation on them. One > way would be to realign all functional data into LIA orientation and > then analyze the data and then simply use spmregister-see or > fslregister-sess to register. Is there any simpler way? > > > > My functionals are 65x85x56 for each slice. I tried using flirt to get > the alignment matrix. But, it is failing badly.. Any ideas would be > welcome.. > > > > Regards, > > krishna > > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
