hmmm, I thought label2label supported annots, but I can't find it in the help. Doug will be able to comment on this when connectivity allows. Bruuce
On Sat, 18 Dec 2010, Lena Palaniyappan wrote: > Thanks Bruce > > But surely there must be some way to get the stats for all Brodmann > parcellations without having to label each region individually... Any ideas? > > Cheers > Lena > > > On 18/12/2010 19:02, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: > > Hi Lena, > > I'm not sure there's much point. You might be better off just using > mri_label2label to propagate the PALS labels to other subjects. > > cheers > Bruce > On Sat, 18 > Dec 2010, Lena Palaniyappan wrote: > >> >> Is it legit to create a .gcs file using fsaverage as the sole subject for >> the PALS parcellations? >> >> I intend to use this .gcs to mri_ca_label all my subjects. >> >> Please advise, >> >> Lena >> >> On 18/12/2010 13:57, "Lena Palaniyappan" >> <lena.palaniyap...@nottingham.ac.uk> wrote: >> >> I want to use the annot file for lobar areas in fsaverage to be mapped onto >> all of my subjects. As I don't want to disassemble the annot to single >> labels but generate lobar.annot for all subjects, I intend to use >> mris_ca_label -l fsaverage/label/lh.PALS_B12_Lobes.annot <subjid> lh >> lh.sphere.reg <classifier> subjid/label/lh.PALS_Lobes.annot >> >> For this purpose. >> >> What cortical classifier file should I use to map the different PALS atlases >> (at least - the two of them : Brodmann and Lobes) >> >> Cheers >> Lena >> >> _______________________________________________________ >> Lena Palaniyappan >> Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of >> Nottingham) >> South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH >> >> >> >> This message and any attachment are intended solely for the addressee and >> may contain confidential information. If you have received this message in >> error, please send it back to me, and immediately delete it. Please do not >> use, copy or disclose the information contained in this message or in any >> attachment. Any views or opinions expressed by the author of this email do >> not necessarily reflect the views of the University of Nottingham. >> >> This message has been checked for viruses but the contents of an attachment >> may still contain software viruses which could damage your computer system: >> you are advised to perform your own checks. Email communications with the >> University of Nottingham may be monitored as permitted by UK legislation. >> >> >> _______________________________________________________ >> Lena Palaniyappan >> Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of >> Nottingham) >> South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > _______________________________________________________ > Lena Palaniyappan > Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of > Nottingham) > South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
