Dear all,
I have not received any advice about this point. Can somebody help me?
thank you!
I followed the instructions found in Freesurfer tutorials ('cortical
thickness of a volume-defined ROI').
However, in the point 4 of the procedure I am not able to change the
--reshape default. My run is:
mri_surf2surf --s subj001 --trgsubject fsaverage --hemi rh --sval
rh.thickness --tval rh.thickness.fsaverage.mgh --reshape-factor 7
but it continues to create (like default) a reshape with 6.
For this reason, I think, the following command:
mri_segstats --seg $SUBJECTS_DIR/rh.fsaverage.mask21.mgh --in
rh.thickness.fsaverage.mgh --sum segstats-mask21.txt
give:
ERROR: dimension mismatch between input volume and seg
input 27307 1 6
seg 23406 1 7
What can I do to solve this problem?
Thank you for your help!
Angela
Angela Favaro, MD, PhD, MSc
Psychiatric Clinic
Department of Neurosciences
via Giustiniani 3
35128 Padova
Italy
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